CI01000057_03847471_03851892 (GAMT)


Basic Information

Item Value
gene id CI01000057_03847471_03851892
gene name GAMT
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3847305 ~ 3852121 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_03847471_03851892.mRNA
AGCTGTTGGGTTAACCATCATGAATCAGAAGCTGTTCCAGCAATGCATGTGAGAGACCACCCCCTTCTCACTGGACTCCTTATCAACACTCACTCTTTGACTACACTGATTCTTGCACAATCAGCAGTTCTTTAAATATATAACACTCAAGTCAGGGCAGAAACGATCTCTTTAGCCACTGCGCGTTGATACACACCACGCCACAACTATCAACATTCAACAATCCACCATGACCACCGCACAGCCGATCTTCTCAAAGGGCGAAAACTGCAAACAAGTGTGGCACGACGCGAGTGCTGACTACAATGCAGCCGACACACACCTGGAGATCATGGGAAAACCCGTTATGGAGCGCTGGGAAACTCCATACATGCACTCTCTTGCAACAGTTGCTGCATCTAAAGGTGGCAGGGTGCTTGAGATCGGCTTTGGAATGGCCATAGCAGCCACTAAAGTGGAGTCCTTCCCCATTGAGGAGCACTGGATCATTGAGTGTAATGATGGCGTGTTCCAGAAGCTACAGGAATGGGCCAAGAGTCAGCCACATAAAGTAAAGCAAAAAACATTTATGTCTGATGTTTGTATTGTGTTGGACTATTATGAACCAGGTATTCTTTATGACACATATCCTTTGTCAGAGGAGACATGGCACACACACCAGTTCAACTTTATCAAGGGTCATGCTAACAGACTGCTGAAGCCCAGCGGTGTGCTCACATACTGTAATCTCACTTCCTGGGGCGAGCTGCTGAAAAATAAATATAATGACATCGACAAAATGTTCCAAGAGACACAAGTTCCCCACCTGCTGGAGGCCGGATTCAAAAAGGAGAAGATCAGCACCACATTGATGGACATCAGTCCTCCCAGTGAATGCAAATACTATTCCTTTAATAAGATGATCACACCAAGTATTGTTAAAGAATAAGAAAACACAACGAGCATATAAATCATTCTATTGTCAATTGTCTCTGAAATTTAATTATTTAATTTATCTATAAGGGTGAATTGCATTAAAATCTCAAGATTACTAGAAAAAGGTTTTTATAAATGACCATACATGCCATTTTTTGATTGTACTACTTGAAAATAAA

Function

symbol description
gamt Predicted to enable guanidinoacetate N-methyltransferase activity. Predicted to be involved in creatine biosynthetic process. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and yolk. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and guanidinoacetate methyltransferase deficiency. Orthologous to human GAMT (guanidinoacetate N-methyltransferase).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K00542 GAMT; guanidinoacetate N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_03847471_03851892.mRNA True 1094 mRNA 0.42 5 3847305 3852121

Neighbor

gene id symbol gene type direction distance location
CI01000057_03629306_03634635 NA coding downstream 212670 3628504 ~ 3634635 (-)
CI01000057_03428989_03429249 NA coding downstream 416931 3428672 ~ 3430374 (-)
CI01000057_03345268_03367172 NA coding downstream 479295 3344746 ~ 3368010 (-)
CI01000057_03192667_03213688 NA coding downstream 633436 3192502 ~ 3213869 (-)
CI01000057_03027103_03027612 NA coding downstream 819454 3027080 ~ 3027851 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 coding upstream 35082 3887203 ~ 3892054 (-)
CI01000057_03903266_03927695 ANO8, ANO8B coding upstream 50028 3902149 ~ 3927695 (-)
CI01000057_03964894_03967760 PLVAP coding upstream 112334 3964455 ~ 3968737 (-)
CI01000057_03995084_03999126 NA coding upstream 141769 3993890 ~ 3999163 (-)
CI01000057_04042903_04046286 CCL44 coding upstream 190649 4042770 ~ 4046320 (-)
G246278 NA non-coding downstream 30962 3815644 ~ 3816343 (-)
G246295 NA non-coding downstream 31745 3814101 ~ 3815560 (-)
G246363 NA non-coding downstream 82603 3764262 ~ 3764702 (-)
G246342 NA non-coding downstream 122581 3719901 ~ 3724724 (-)
G246341 NA non-coding downstream 125481 3718082 ~ 3721824 (-)
G246407 NA non-coding upstream 139440 3991561 ~ 3991876 (-)
G246429 NA non-coding upstream 209502 4061623 ~ 4140129 (-)
G246279 NA non-coding upstream 342903 4195024 ~ 4195559 (-)
G246281 NA non-coding upstream 355842 4207963 ~ 4208933 (-)
CI01000057_01904867_01921400 NA other downstream 1925884 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2042152 1801528 ~ 1806454 (-)
G244358 NA other downstream 3276277 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 1076623 4927533 ~ 4931420 (-)
G246780 NA other upstream 1358989 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 2071419 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location