XLOC_010066


Basic Information

Item Value
gene id XLOC_010066
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33250490 ~ 33293780 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021727
CAGCAGGTTCAGGAATTGCTCCCTGTCCGCCACACAGTGTTCTCGACTAAGAAGCCTGATGCTGGTGTTAGGCTATTCTTTAAAGATAGCAGCTCCTTCTGGACTGTGGTGACTGGAGCTGAGGTGAATTCGATTCCGGTCTGTTCAAGTCAGCTGATGGGTTTGTTCAACAAGTTCTGTCTGCAATATTTCAGCGAGGATGACAATCAGATATTCCAGTGGACCAGACATTCACTATTTTGAGGTATGCTTGAATATTTTTACGCAAaa
>TCONS_00020008
ATTACATTTGAATTACATTCTAATGACAGCTATGAAAGTTTTAAATTAGCTAACTAAAGAATTTCCCGCCTCGGCTCAAGGATACAGTCTATGCCAAACCTAGTCAGTCGAGCTGCAACGGTTTACGTCGACGACCGCCTCAGTGGTTCAGGGCTCTGAAGTAAATGTTCTCTAAACTTATATGTTTTCTAAATTGTTGTTGCTAGCATCTGGAATCTTGATTTAAGATCGTGAATGTTTTTGTTCATCGGGACAACTTAACTTTTTCATGATGTGAAAAACTGAGGGCTGCTTCGACGGTGAGGTGAATTCGATTCCGGTCTGTTCAAGTCAGCTGATGGGTTTGTTCAACAAGTTCTGTCTGCAATATTTCAGCGAGGATGACAATCAGATATTCCAGTGGACCAGACATTCACTATTTTGAGGTGGAGAGTCCCTGTGGGGCCCATGAAGCTACTGTGCCACCGCAGTCTTAACAGCTTCTGCAGACTCCAGCGGGATGCGTCCACTGATAGAGGAAGCCCAGGAGAACAACAGAGACAGAACAATCCTGCAGCAGCCGAGTCCATCCAGGGCTGCTGTTGGTCAGGCCGTGCCTGAAGCTGGAGCTGCGGTGTGCTGGTGCCGAGGTCAGACGCTGCCACTGTGGGTTAGGCTGCTGGTCTGATCCGTGTTGACAGTGCAGATTCCTGTCAAGCCCAAGGAGACAAGCAGTGCTTCCAGCTAGAGAGTGAACCTTCGCACTGACCACTGCTGGAAGGATGGGTGAGTCACATCTCCAGTCTTCCATTCGATCG
>TCONS_00020009
TTCAGATTGGCTTGTTTTGTTCAAACAGGTGAATTCGATTCCGGTCTGTTCAAGTCAGCTGATGGGTTTGTTCAACAAGTTCTGTCTGCAATATTTCAGCGAGGATGACAATCAGATATTCCAGTGGACCAGACATTCACTATTTTGAGAGTTTGATAGAACTGATCTGTGGCCTGTTTGGTGGTGGTGCTGCTTCAGAGGGACCGGAGAAACATGCAagatgagggggaaaaaaaag
>TCONS_00021728
CTGTGCCACCGCAGTCTTAACAGCTTCTGCAGACTCCAGCGGGATGCGTCCACTGATAGAGGAAGCCCAGGAGAACAACAGAGACAGAACAATCCTGCAGCAGCCGAGTCCATCCAGGGCTGCTGTTGGTCAGGCCGTGCCTGAAGCTGGAGCTGCGGTGTGCTGGTGCCGAGGTCAGACGCTGCCACTGTGGGTTAGGCTGCTGGTCTGATCCGTGTTGACAGTGCAGATTCCTGTCAAGCCCAAGGAGACAAGCAGTGCTTCCAGCTAGAGAGTGAACCTTCGCACTGACCACTGCTGGAAGGATGGGTGAGTCACATCTCCAGTCTTCCATTCGATCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117648

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021727 False 270 lncRNA 0.45 2 33250490 33255253
TCONS_00020008 False 797 lncRNA 0.48 4 33254300 33293780
TCONS_00020009 False 238 lncRNA 0.44 2 33255079 33288208
TCONS_00021728 True 341 lncRNA 0.57 2 33291419 33293780

Neighbor

gene id symbol gene type direction distance location
XLOC_010065 NA coding upstream 35953 33180106 ~ 33214537 (+)
XLOC_010064 rragca coding upstream 71371 33163858 ~ 33179119 (+)
XLOC_010063 rhbdl2 coding upstream 95972 33142734 ~ 33154518 (+)
XLOC_010062 akirin1 coding upstream 108556 33121106 ~ 33141934 (+)
XLOC_010061 cnr2 coding upstream 130864 33109496 ~ 33119626 (+)
XLOC_010067 AL954832.1 coding downstream 49371 33343151 ~ 33343265 (+)
XLOC_010068 pou3f1 coding downstream 299336 33593116 ~ 33595985 (+)
XLOC_010069 fhl3a coding downstream 362110 33655890 ~ 33736831 (+)
XLOC_010070 BX530064.2 coding downstream 458322 33752102 ~ 33756379 (+)
XLOC_010071 gnl2 coding downstream 608226 33902006 ~ 33925877 (+)
XLOC_010060 NA non-coding upstream 187331 33058899 ~ 33063159 (+)
XLOC_010055 CR848729.4 non-coding upstream 577554 32672820 ~ 32672936 (+)
XLOC_010053 CR533571.1 non-coding upstream 741032 32397507 ~ 32509458 (+)
XLOC_010052 NA non-coding upstream 884919 32278999 ~ 32365571 (+)
XLOC_010080 NA non-coding downstream 1021982 34315762 ~ 34321379 (+)
XLOC_010081 NA non-coding downstream 1026109 34319889 ~ 34323007 (+)
XLOC_010082 NA non-coding downstream 1185217 34478997 ~ 34502203 (+)

Expression


Co-expression Network