CI01000057_04145896_04146600 (NRTN)


Basic Information

Item Value
gene id CI01000057_04145896_04146600
gene name NRTN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4145264 ~ 4146790 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04145896_04146600.mRNA
AGCTTGCATTTGTTAAATACTGATTCATGTGTACAAAACTTTAATTTCAGCTGATAAGTTTAGGTTAAAGCTTATGTCAATGTCTTGCCTCATAGACTTCCATTGAAAACCGAATAATATAATTGAAACAATGCTAATGTTTTTGCCATGCTAAATGCTAAAAATAATTAACCCTCCTTTTTTCTTAGTCATGGAGATGTTCCAGAGTTTCACAGAGGGCGAGCTGAAGCAGGTCATTGGGACACTGGTGGAAAGGAAAGCCCGTAGAGATTCCCAGCAGAGCAAAAGGACTAAACGGGCTAAAAAGAGAGCCAAACCCTGCTCGCTGCAGGATGTGGAGGTGACGGTCAGTCAGCTGGGGTTGGGCTACGTCAGTGACGAGACTATAGTCTTCCATTACTGCAGCGGAAAGTGCACCACTAGTCGCAAAAACTATGACCTGACGCTGGCGTTCATGAAGCGCTCACGGTTGCTCACAAAAGAACAGAAGGACAAGGCTCGCCACAGCCCCTGCTGTCGGCCCACCGCGTATGAGAAGGACATCTCCTTCCTCGATAACTTCAGTCAATACCACACAATCCAAGAGTTTTCGGCCCAAGCATGTGGCATACGAGAGCGTATGTCTTACATTGCCTTTACGAAAAATACTTGGCTGACAGATTCTCCTCAGAAACTTCTGCCAGTCCTGATGAAGAGAAATAGGAAACATATCATGCAAACAGTAATTATTCCCATGTTTAGTCGTTGCTAATGAGATGCTGCTGTATGTCTTGTTTATATTGCCTTCATGGGTCTATGTCAAATAGCTTGAAATGCTGAGTGAATGTTGAGCTCAGAGTTTAAACGCAGAACACCTCTAGAAAATGAATTCAGGGCTTCAGTAAACAAAGCAAAATACACAAAGGCACACCCAGTGCTGAACAAAACTTTCTCGTTGTGCTGAGAAAGGAATGGAACTGGCATGTAAATGATCCCAGCAATTCTGAAAGGTCTCAGTTCTGAGTGTCTGGTATTTCAAAGTCAAAACATTCCCACAAATCAAGTTCAAACGAACATATTAAATATACTAAACATCTACCTCAGCTTGTAGTCGACGTGGCTCCGTAAAAGAATACCCAGTATTTCATTAAAATATTTAAATGCATTAAATAGTAGCCTATAATAATTAAAACAATATTTATAAAGGAATCAAAAAAGAATACTAACAGTGTATTAAAGGCTGGAATACACACAACTTTTAAAATGTGAACAGATTTTAAATTGCCACACTTGCCAACTTTTGTACATAGTTACAGAGAAAAACTGGGATATATCACTTAACAGCTGTATACTACCGGACTTTCAAGTCATTCTGAACACAACAAACTCAAGGAGACAAATAAA

Function

symbol description
nrtn Predicted to enable glial cell-derived neurotrophic factor receptor binding activity; growth factor activity; and receptor tyrosine kinase binding activity. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in Hirschsprung's disease. Orthologous to human NRTN (neurturin).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04145896_04146600.mRNA True 1383 mRNA 0.40 2 4145264 4146790

Neighbor

gene id symbol gene type direction distance location
CI01000057_04055321_04058726 POLE4 coding downstream 86195 4055291 ~ 4059069 (-)
CI01000057_04042903_04046286 CCL44 coding downstream 98944 4042770 ~ 4046320 (-)
CI01000057_03995084_03999126 NA coding downstream 146101 3993890 ~ 3999163 (-)
CI01000057_03964894_03967760 PLVAP coding downstream 176527 3964455 ~ 3968737 (-)
CI01000057_03903266_03927695 ANO8, ANO8B coding downstream 217569 3902149 ~ 3927695 (-)
CI01000057_04195849_04198909 NDUFA11 coding upstream 49005 4195795 ~ 4198909 (-)
CI01000057_04210090_04214161 NA coding upstream 63126 4209916 ~ 4214161 (-)
CI01000057_04455612_04467173 DDX49, DDX49.S coding upstream 308244 4455034 ~ 4467217 (-)
CI01000057_04467496_04467864 NA coding upstream 320683 4467473 ~ 4468001 (-)
CI01000057_04512368_04525620 COMP coding upstream 365087 4511877 ~ 4525620 (-)
G246429 NA non-coding downstream 5135 4061623 ~ 4140129 (-)
G246407 NA non-coding downstream 153388 3991561 ~ 3991876 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 non-coding downstream 255003 3887203 ~ 3892054 (-)
G246278 NA non-coding downstream 328921 3815644 ~ 3816343 (-)
G246295 NA non-coding downstream 329704 3814101 ~ 3815560 (-)
G246279 NA non-coding upstream 48234 4195024 ~ 4195559 (-)
G246281 NA non-coding upstream 61173 4207963 ~ 4208933 (-)
G246474 NA non-coding upstream 62567 4209357 ~ 4209730 (-)
G246488 NA non-coding upstream 100734 4247524 ~ 4247797 (-)
G246497 NA non-coding upstream 115084 4261874 ~ 4262549 (-)
CI01000057_01904867_01921400 NA other downstream 2223843 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2340111 1801528 ~ 1806454 (-)
G244358 NA other downstream 3574236 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 781954 4927533 ~ 4931420 (-)
G246780 NA other upstream 1064320 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1776750 5923540 ~ 5927295 (-)

Expression


Co-expression Network