CI01000057_04455612_04467173 (DDX49, DDX49.S)


Basic Information

Item Value
gene id CI01000057_04455612_04467173
gene name DDX49, DDX49.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4455034 ~ 4467217 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04455612_04467173.mRNA
AGTTTATGTTTCGGACATTTCGTTTTTAAATAACCCAGTGGAAAATGGCCACTTTTGAGTCTCTCGGACTGCACGAGTGGTTGATTCAGCAGTGTAAGCAGATGGGCATCAGCCGACCGACCCCTGTACAGGAGAAATGCATTCCTGCCATATTGGAGGGTCGGGATTGCATGGGCTGTGCAAAAACTGGAAGTGGAAAAACGGCAGCATTTGTTCTCCCAGTGCTGCAGAAGTTATCTGAGGACCCTTATGGTGTTTTCTGCTTGGTGTTAACACCCACCAGAGAGCTTGCTTACCAGATTGCAGAACAGTTCAGAGCATTAGGGAAGCCCTTAGGCTTAAAGGACTGCATCGTTGTGGGAGGAATGGACATGGTCACTCAGGGTTTGGAGATGTCAAAAAAGCCACATGTTGTTGTTGCTACTCCGGGACGACTTGCTGATCACATCCGAAGCTCTGACACGGTTAACCTGAAAAGAATCCAATTTCTAATCCTGGATGAAGCTGATCGTCTTTTAGAGCAGGGCTGCACAGATTTCACTAAAGATCTAGAGGTCATTCTCAGTGCTGTGCCCGCAAAACGCCAGACGCTGCTGTTCAGTGCCACGCTCACGGACACGCTGCAGCAGCTGCAGAGCATCGCCATGAACCGGCCTTTCTTCTGGGAGCACAAATCAGAGGTGCAGACTGTAGAAGAACTGGATCAGAGATTCATCCTCACTCCTGAGAAAGTCAAAGATGCTTACTTGGTCCATCTTATCCAAAAGTTCCAGGATGAACATGATGATTGGTCTATCATAATATTCACTAACACATGCAAGAACTGTCAGATACTCACAATGATGCTGCGTGAATTCAATTTCCCAACCATCTCTCTGCACTCAATGATGAAGCAGAGACAGCGTTTTGCCAACCTTGCAAAGTTCAAGTCCAACGTCTTTAAAATTCTCATAGCCACAGATGTCGCTGCCAGGGGTTTAGATATTCCTACAGTGCAAGTTGTTATTAATCACAACACTCCAGGTTTGCCAAAAATCTACATCCACAGAGTGGGACGAACCGCTCGAGCTGGCCGAAATGGTGTGTCAATCACTCTAGTCACACAGTATGACATCCACCTCATCAGTGCTGTCGAGGAACAGACCCAGGTGAAACTGAAGGAGTTTCTTGTTGAAGAGGCAGAGGTGTTGAAGATCCTCACCCAAGTCAACGTAACAAGACGACGGTGTGAAATTAAACTAGAGTCCACTGATTTTGATGAGAAAAAGAAGATAAACAAAAGGAAGCAGATGATTCTGGAGGGAAAACTCCCGTTATCTTTACTGAAGACAGCACAGAACCACCCGATGGATGGAGATAAATTTTGGAGGATGCCGGAATGCTACATCAGAGGAAGCACCATTAAATACTTACGAATCCCTGATGAAATCATAGATATGGTGAAAGAGGAAGTAATATCAAAGGGGCGTGGCCGGGGAGGTATGCAGCAGAACAAGCCACAGGGAAAAGGCAGAGGAGGTGGACCTGGAAGAGGTGGTGGAGCCGGCAGAGGTATTTTTGGTGGCCGTGGCAGAGGCATGACGGGAACTGGCCGTGGACAGCAACAAGACAAAAAGCCTGGAAAACCACAAGGTGTCAAAAACCCAAACTAATTATAAAACAGATCCTTCCCTCGTATGTTAGTTTTACTCTCTTTAGGCACAAGAGCACCTCTTCAGGTCTCTTGGCGTTTATTTATTAACATCGTAATTCTCTTTTAGAGATTCATTTACAAGCCTCAGTTTGTGTATCAAACTGTTCAACAACTTTTTTGCACTGAGTTTATTGTAAAAGTACCGTGGCAGAGAGAGCTCAACATGCTACAACTAAAGAAAAAACACCAGCAAATTAAGAAAACATCTTCATCAGTTTGACATGTGTGCTGAAAATACTCACAACTCTAGCAAATACTCACAGTGCAACCAAATACTGAATCACGCTGCAAATACTCAACGCACAAACGATCAGGAGGTTAAAATAAGAAACTCACAACATTTCACGAGCAACATTTCCATTGTGGTCTGTGCTATTTGCAGCACGTTTCTGTATTTGGTTGCATTGTTAGTATTTGCAGCACATGTTGTCAAACTGATGAAGATGTTTTCTTAATTTGCTGGTGTTTTTTCTATTTGCATGTGTTTTCTTCAGTTGCAGCGCGTTGAGCTCTCTCGGCCACCGGGGGAAAAATAAA

Function

symbol description
ddx49 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human DDX49 (DEAD-box helicase 49).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14778 DDX49, DBP8; ATP-dependent RNA helicase DDX49/DBP8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04455612_04467173.mRNA True 2230 mRNA 0.45 15 4455034 4467217

Neighbor

gene id symbol gene type direction distance location
CI01000057_04210090_04214161 NA coding downstream 240873 4209916 ~ 4214161 (-)
CI01000057_04195849_04198909 NDUFA11 coding downstream 256125 4195795 ~ 4198909 (-)
CI01000057_04145896_04146600 NRTN coding downstream 308244 4145264 ~ 4146790 (-)
CI01000057_04055321_04058726 POLE4 coding downstream 395965 4055291 ~ 4059069 (-)
CI01000057_04042903_04046286 CCL44 coding downstream 408714 4042770 ~ 4046320 (-)
CI01000057_04467496_04467864 NA coding upstream 256 4467473 ~ 4468001 (-)
CI01000057_04512368_04525620 COMP coding upstream 44660 4511877 ~ 4525620 (-)
CI01000057_04543887_04545600 NA coding upstream 75654 4542871 ~ 4546001 (-)
CI01000057_04560576_04573644 NA coding upstream 92423 4559640 ~ 4573644 (-)
CI01000057_04583096_04590861 ISY1 coding upstream 115694 4582911 ~ 4590861 (-)
G246595 NA non-coding downstream 11220 4434813 ~ 4443814 (-)
G246546 NA non-coding downstream 21244 4382698 ~ 4433790 (-)
G246573 NA non-coding downstream 28661 4424980 ~ 4426373 (-)
G246559 NA non-coding downstream 34762 4419322 ~ 4420272 (-)
G246519 NA non-coding downstream 109293 4344210 ~ 4345741 (-)
G246609 NA non-coding upstream 17692 4484909 ~ 4485182 (-)
G246611 NA non-coding upstream 20095 4487312 ~ 4497669 (-)
G246617 NA non-coding upstream 28370 4495587 ~ 4496458 (-)
G246597 NA non-coding upstream 65579 4532796 ~ 4534368 (-)
G246603 NA non-coding upstream 89509 4556726 ~ 4557010 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 557343 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 2533613 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2649881 1801528 ~ 1806454 (-)
G244358 NA other downstream 3884006 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 461527 4927533 ~ 4931420 (-)
G246780 NA other upstream 743893 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1456323 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110492606 LOC106573909 misc NC_048565.1 CM023219.2 16916482 ~ 16920945 (+)