CI01000057_04861618_04865902 (ITGA7)


Basic Information

Item Value
gene id CI01000057_04861618_04865902
gene name ITGA7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4861618 ~ 4865902 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04861618_04865902.mRNA
GCTGTCTCGCCCTCATCAGCTGTTCTTCAGCGGAGAGGTGAGGGGAGAGAGCGCTATGACATCACTGGAGGACGTCGGCAGCGCAGTGGACTATGAATTTATTATGACTAATACTGGGCAGTCTCTCCAAACGTTCGGCTCGGCATCTCTGAACATCCTGTGGCCGTACGAGCTGATCAATAAGAAGTGGCTGTTGTATCCGAGCTCTCTGCAGATCGACGGCCATCCACATACTCGCTGTGAACCACAGTCGGCGCTCGACCCTCTGCATCTGGCCCAGGCAGAACACCTCAAGAGCAGCAGAAAGGTGCGCTCGCATCAGGAAACCGAAGCAGACGTGGTTCCCAAAAACCCTGAAGGCAAAATCACTCCAGCTGTGTCTGCGTCTGAGAGGAGGAGGTCTCTCACACTGGATTGTTTACTGGGCTCTGCACGCTGCCTGCTCTTCCGGTGTCCTCTAGACAAGTTCTCCGGCTCCATCCATATCAGGATCAGAGCAAACTTGTGGAACAGCACTTTCATTGAGGAGTTTTCATCGGTCAGTGCCGTAGAGCTGCTGGTCAGAGCCAATATCACCATTAAATCCGACATCAGGCATCTAGTGCTGAAGGACGCAGCTACACAGGTGTCAGTGATGATTTACCCAGAGATCGGGCTCTCAGACCAGCACAGCATCCCGTGGTGGATCATCCTCATTGCCGTCCTGGCTGGAGTTATTGTTCTTGCGCTGCTCGTGTGTGTACTGTGGAAG

Function

symbol description
itga7 Acts upstream of or within cell-matrix adhesion; muscle attachment; and skeletal muscle tissue development. Is expressed in myoseptum; myotome; skeletal muscle cell; and somite. Human ortholog(s) of this gene implicated in Duchenne muscular dystrophy; congenital muscular dystrophy due to integrin alpha-7 deficiency; and muscular disease. Orthologous to human ITGA7 (integrin subunit alpha 7).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04861618_04865902.mRNA True 751 mRNA 0.54 6 4861618 4865902

Neighbor

gene id symbol gene type direction distance location
CI01000057_04794580_04834143 COL2A1 coding downstream 27189 4793517 ~ 4834429 (-)
CI01000057_04787300_04788191 NA coding downstream 73427 4786712 ~ 4788191 (-)
CI01000057_04743808_04746558 NA coding downstream 113521 4743406 ~ 4748097 (-)
CI01000057_04728914_04731946 NA coding downstream 127895 4728872 ~ 4733723 (-)
CI01000057_04718947_04721031 NA coding downstream 140542 4718918 ~ 4721076 (-)
CI01000057_04866089_04878847 ITGA7 coding upstream 187 4866089 ~ 4878847 (-)
CI01000057_04891502_04906844 ELMO2 coding upstream 24333 4890235 ~ 4906844 (-)
CI01000057_04916382_04926437 ARFGAP1 coding upstream 50480 4916287 ~ 4926437 (-)
CI01000057_04927533_04931127 CDK4 coding upstream 61631 4927533 ~ 4931420 (-)
CI01000057_05163258_05169859 NA coding upstream 296738 5162640 ~ 5170119 (-)
G246691 NA non-coding downstream 57239 4801672 ~ 4804379 (-)
G246676 NA non-coding downstream 80566 4780766 ~ 4781052 (-)
G246669 NA non-coding downstream 111477 4749815 ~ 4750141 (-)
G246662 NA non-coding downstream 136440 4724516 ~ 4725178 (-)
G246658 NA non-coding downstream 147259 4714091 ~ 4714359 (-)
G246682 NA non-coding upstream 71049 4936951 ~ 4937172 (-)
G246750 NA non-coding upstream 79496 4945398 ~ 4945752 (-)
G246751 NA non-coding upstream 80485 4946387 ~ 4946622 (-)
G246753 NA non-coding upstream 83651 4949553 ~ 4952336 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 963927 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 2940197 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 3056465 1801528 ~ 1806454 (-)
G244358 NA other downstream 4290590 570530 ~ 571028 (-)
G246780 NA other upstream 345208 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1057638 5923540 ~ 5927295 (-)

Expression


Co-expression Network