Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_001007 |
| gene name | socs1b |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 8962624 ~ 8966046 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| socs1b | Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; regulation of growth; and regulation of signal transduction. Predicted to be located in cytoplasm. Predicted to be part of phosphatidylinositol 3-kinase complex. Is expressed in head kidney. Human ortholog(s) of this gene implicated in ovarian carcinoma; prostate cancer; and urinary bladder cancer. Orthologous to human SOCS1 (suppressor of cytokine signaling 1). |
| id | name | namespace |
|---|---|---|
| GO:0060334 | regulation of interferon-gamma-mediated signaling pathway | biological_process |
| GO:0046854 | phosphatidylinositol phosphorylation | biological_process |
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0046426 | negative regulation of receptor signaling pathway via JAK-STAT | biological_process |
| GO:0005942 | phosphatidylinositol 3-kinase complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0046935 | 1-phosphatidylinositol-3-kinase regulator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090313-141 | Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; regulation of growth; and regulation of signal transduction. Predicted to be located in cytoplasm. Predicted to be part of phosphatidylinositol 3-kinase complex. Is expressed in head kidney. Human ortholog(s) of this gene implicated in ovarian carcinoma; prostate cancer; and urinary bladder cancer. Orthologous to human SOCS1 (suppressor of cytokine signaling 1). |
| ensembl_id | ENSDARG00000089873 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00001602 | False | 964 | mRNA | 0.44 | 2 | 8962624 | 8966046 |
| TCONS_00001603 | True | 632 | mRNA | 0.48 | 1 | 8962853 | 8963484 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_001006 | grin2ab | coding | downstream | 33783 | 8763429 ~ 8928841 (-) |
| XLOC_001005 | abcg2b | coding | downstream | 270655 | 8673061 ~ 8691969 (-) |
| XLOC_001004 | actb1 | coding | downstream | 309239 | 8649099 ~ 8653385 (-) |
| XLOC_001003 | fbxl18 | coding | downstream | 315683 | 8638162 ~ 8646941 (-) |
| XLOC_001002 | NA | coding | downstream | 337358 | 8612575 ~ 8625266 (-) |
| XLOC_001008 | NA | coding | upstream | 8454 | 8974500 ~ 8977963 (-) |
| XLOC_001009 | NA | coding | upstream | 12859 | 8978905 ~ 8980671 (-) |
| XLOC_001010 | NA | coding | upstream | 115796 | 9081842 ~ 9082772 (-) |
| XLOC_001011 | si:ch211-14k19.8 | coding | upstream | 134401 | 9100447 ~ 9115034 (-) |
| XLOC_001012 | ndufab1a | coding | upstream | 152054 | 9118100 ~ 9123465 (-) |
| XLOC_001001 | NA | non-coding | downstream | 375265 | 8579155 ~ 8587359 (-) |
| XLOC_000998 | NA | non-coding | downstream | 452558 | 8504977 ~ 8510066 (-) |
| XLOC_000996 | NA | non-coding | downstream | 757396 | 8202390 ~ 8205228 (-) |
| XLOC_000985 | CR855320.6 | non-coding | downstream | 1042418 | 7920119 ~ 7920206 (-) |
| XLOC_001015 | NA | non-coding | upstream | 172592 | 9138638 ~ 9139160 (-) |
| XLOC_001016 | BX004779.2 | non-coding | upstream | 191264 | 9157310 ~ 9162637 (-) |
