XLOC_010071 (gnl2)


Basic Information

Item Value
gene id XLOC_010071
gene name gnl2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33902006 ~ 33925877 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020015
TGGTGAGGGGGCAAACTCGTCGCGTGGTTGATGACGTATTTCCGGGTTCGTGTAGTTTATTGTAACACGTGGAAATCAACAACGGACTGCAACACtgcattatttcttttatttacagtaatacgAGGGCCCCGGATTAATCGTTCAAGATGGTTAAGGCAAAATTCAAGGGGAAAAGCTCCATAAACACCTCAAGCTCCAGTAGTAATCCCGACCGAGTCAAGGGAGCTGGAGGAAACAACATGAGGGACCGAGCAACTATAAAGCGCCTGAATATGTACAGACAAAAGCAGAGATGTAACAGTCGAGGTAAAGTCATCAAACCTTTGCAGTACCAGAACACAGTCGCTCCTGGAACTGTGGCCAGAGTTGAGCCCAACATCAAGTGGTTTGCCAACACAAAAGTCATCAAGCAGTCATCCTTGCAGAAGTTTCAGGAAGAAATGAACGCGGTGAAGAAAGATCCATACCGAGTGGTGATGAGACAGAGCAAACTACCAATGTCTTTGCTGCATGACCGGATAAAAGCACACAACTCCAAGGTGCATATTCTAGACACTGAGACGTTTGAGACAACATTTGGACCTAAGGCGCAGAGAAAGAGGCCAAACTTGTCTGTAGGAGAGCTGAAAGAGTTTGCTGAACAGGCTGAGGTCTCTGCACAGAGCTACAGTGCAGAGAAAGACCGCGATTTGGTGTCTGAGGACAGCGGAGTCAAGGAAGAGGCTCGTGAGGAGATCTTCAAGAAGGGGCAGTCAAAACGGATCTGGGGTGAGCTTTATAAGGTGATCGACTCTTCGGACGTAATTATCCAGGTGCTGGATGCTCGGGACCCAATGGGCACACGCTCACAAAGCATTGAGACTTACTTGAAGAAAGAGAAGCCTTGGAAACACCTCATATTTGTGCTCAATAAGTGTGACCTCATTCCCACATGGGTTACGAAACACTGGGTTGCAGTTCTTTCCCAGGAATACCCTACTTTGGCCTTTCACGCAAGCCTTACCAACTCCTTCGGCAAGGGCTCACTTATCCAGCTCCTGCGGCAGTTTGGCAAGCTCCATTCCGACAAAAAACAGATCAGTGTTGGTTTCATTGGTTACCCCAACGTTGGAAAGAGCTCTATTATCAATACCCTGCGCTCCAAAAAAGTCTGTAATGTGGCACCCCTTGCTGGTGAAACTAAGGTTTGGCAGTACATCACACTAATGAGACGGATTTTCCTCATCGACTGTCCTGGCGTTGTTTACCCGTCTGACGACAGCGAGACTGACATTGTGCTGAAGGGAGTGGTCCAAGTAGAGAAGATCCGAAATCCAGAGGATCACATTGGAGCAGTGCTGGAAAGAGCCAAAGCAGAGTACATCCAGAAGACATACCGCATTCCCTCCTGGAGCTCTGCCGAGGATTTCCTGGAAAAACTCGCCTTTCGCACCGGAAAACTGCTTAAGGGTGGAGAACCAGATCTGCCTACTGTGTCCAAAATGGTTCTGAATGATTGGCAGAGGGGACGCATCCCGTTTTTTGTCAAGCCCCCTGGCGTTGAGACAGACGAAGAGAACAAAGCCCAGGCGATGCTGGAAATGCCGGAGATGGAAAGCGAGATGGATGAGTTGGAAAACAGACTTGAAGCGCAGGATGTGGAAGAGGCCTCATCAAGCCAGCATGAAGAACAAAAGCTGCTGAAAAAGAAGAAGGAAGAGGTGCAGAAACTCTTCAATGATGTCAAGCAGAACTTTGGCAAAATTAACGTCGCCCCGGAGTTCAGCGAGGAAGACCTTGTGCCTGTGGAGATGCCGGACATGATGGATGCTTCCGGCTCAGAAGATGAGGaaaatgaggaggaggaggaggaggaggatgaggagaAAGCGGAAGAGGAGACTGGAGAACAGCAGGAAGAAGAATCCTCTGTTTCAGACTCAACACCCAAAGCAGGGAAAAAGAGCACACAGGAAGTGAACAAAGAGATGGATGAGAAGATTGCtaaattgaaacattttcttGATCGAGCCAAGTCAAAGCACTTCTCCGCCATACGCATTCCTAAAGGCCTTTCTGAAAGGGTGTTTACTGAAACAGTAGCAAAGCAGAACGCTGCAAAGAATCAACAACAGAAAGCTGTAAAACAAGGCAAACGGAGGAGAGCTGTAGAAGATGAGCCTGCACAGCCTGCAAAACTCACATCTAAAGAGAAAAGGAGAATTGAGCGTGCCCAGAAAGTGAAGAAAGTGGGAGTCCGCTATTATGAGACGCACAACGTCAAGAACAAGAATAAGAACAGAAAAATTCCCTCAGATGGCAAGAAAGCCAATCGAGCCAAGCGATAAGAGCACATCATTAGATACCCAGTCCCATCCATCCCGTTTTCCAGAGTCCCGTTGGCGGCTGATTCGGAAGATCTGGAGTCAAATCACAGTGATTTGTGTAAAGGTGCAGGTTTGGCAGATCTGTGATGCACTTTAATCATACTGTGATGCTAACCATCATCCTAAACATTACGACTGCACTCTGACAGCTAATTCTCTTCAGCATTGTGCATTTTCAAAAGCTTTTAACTTAAGTCAACGTCCAGATTCAGCAATGTTGAAATGTGAATCATGTACTTAGTGCCATTATTGTCTGGTGAAAAAGCAACACATTCTCAGAGCGTATAAATCTTTTATTTGTTGAATTTGTTTGAGTTGGAGTATTATTGTTCTAATAATATTTAGGATTTATTCTTCAGGGTGATTATGCTCTCCAGTTGTgcctaaataaacaaatgaaagcgTAA
>TCONS_00020016
TTATTGTAACACGTGGAAATCAACAACGGACTGCAACACtgcattatttcttttatttacagtaatacgAGGGCCCCGGATTAATCGTTCAAGATGGTTAAGGCAAAATTCAAGGGGAAAAGCTCCATAAACACCTCAAGCTCCAGTAGTAATCCCGACCGAGTCAAGGGAGCTGGAGGAAACAACATGAGGGACCGAGCAACTATAAAGCGCCTGAATATGTACAGACAAAAGCAGAGATGTAACAGTCGAGGTAAAGTCATCAAACCTTTGCAGTACCAGAACACAGTCGCTCCTGGAACTGTGGCCAGAGTTGAGCCCAACATCAAGTGGTTTGCCAACACAAAAGTCATCAAGCAGTCATCCTTGCAGAAGTTTCAGGAAGAAATGAACGCGGTGAAGAAAGATCCATACCGAGTGGTGATGAGACAGAGCAAACTACCAATGTCTTTGCTGCATGACCGGATAAAAGCACACAAACACTGGGTTGCAGTTCTTTCCCAGGAATACCCTACTTTGGCCTTTCACGCAAGCCTTACCAACTCCTTCGGCAAGGGCTCACTTATCCAGCTCCTGCGGCAGTTTGGCAAGCTCCATTCCGACAAAAAACAGATCAGTGTTGGTTTCATTGGTTACCCCAACGTTGGAAAGAGCTCTATTATCAATACCCTGCGCTCCAAAAAAGTCTGTAATGTGGCACCCCTTGCTGGTGAAACTAAGGTTTGGCAGTACATCACACTAATGAGACGGATTTTCCTCATCGACTGTCCTGGCGTTGTTTACCCGTCTGACGACAGCGAGACTGACATTGTGCTGAAGGGAGTGGTCCAAGTAGAGAAGATCCGAAATCCAGAGGATCACATTGGAGCAGTGCTGGA

Function

symbol description
gnl2 Predicted to enable GTP binding activity. Acts upstream of or within several processes, including cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); neural retina development; and regulation of exit from mitosis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including head; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human GNL2 (G protein nucleolar 2).

GO:

id name namespace
GO:0003407 neural retina development biological_process
GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0007096 regulation of exit from mitosis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-2317 Predicted to enable GTP binding activity. Acts upstream of or within several processes, including cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); neural retina development; and regulation of exit from mitosis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including head; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human GNL2 (G protein nucleolar 2).

Ensembl:

ensembl_id ENSDARG00000098080

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020015 False 2776 mRNA 0.46 16 33902006 33925877
TCONS_00020016 True 878 mRNA 0.47 8 33902062 33919790

Neighbor

gene id symbol gene type direction distance location
XLOC_010070 BX530064.2 coding upstream 145627 33752102 ~ 33756379 (+)
XLOC_010069 fhl3a coding upstream 165175 33655890 ~ 33736831 (+)
XLOC_010068 pou3f1 coding upstream 306021 33593116 ~ 33595985 (+)
XLOC_010067 AL954832.1 coding upstream 558741 33343151 ~ 33343265 (+)
XLOC_010066 NA coding upstream 608226 33250490 ~ 33293780 (+)
XLOC_010072 snip1 coding downstream 4987 33930864 ~ 33937924 (+)
XLOC_010073 gpn2 coding downstream 12350 33938227 ~ 33943728 (+)
XLOC_010074 arid1aa coding downstream 27767 33953644 ~ 33986796 (+)
XLOC_010075 pigv coding downstream 62015 33987892 ~ 33990724 (+)
XLOC_010076 zdhhc18a coding downstream 66442 33992319 ~ 34006335 (+)
XLOC_010065 NA non-coding upstream 687469 33180106 ~ 33214537 (+)
XLOC_010060 NA non-coding upstream 838847 33058899 ~ 33063159 (+)
XLOC_010080 NA non-coding downstream 389885 34315762 ~ 34321379 (+)
XLOC_010081 NA non-coding downstream 394012 34319889 ~ 34323007 (+)
XLOC_010082 NA non-coding downstream 553120 34478997 ~ 34502203 (+)
XLOC_010085 AL929184.1 non-coding downstream 798691 34724568 ~ 34724682 (+)
XLOC_010086 NA non-coding downstream 987407 34913284 ~ 34916253 (+)

Expression


Co-expression Network