CI01000057_05553430_05562372


Basic Information

Item Value
gene id CI01000057_05553430_05562372
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5551558 ~ 5562448 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_05553430_05562372.mRNA
ACCGACAGAGACAAAGACATTTCATTCAGCGCCACATAAAGTGAGTTTATATAGTTGATCATTTCTGAGAGTGATGATGGGAGTCCCGCTGTCTGCTGCGCTGCTGTTCCTGCTGTCTGTGGGTCTGAAGGAGCAGGTGGTGGAGAGCTGCAGCTGCGTTCCAAGACACCCGCAGGAGTTCTTCTGCACGTCTGACATAGTGATGCGAGCTGAGATAACTGGGGAGAAGCTCATAGCCGGAGATATAAATATAAGCGGCACGGGAGAAATTCAATATGATGTCAAAGTGATAAAGGTGTTCAAAGGATCTGACAAAATAAAGAACATCAAGCATGTCTATACGAGTGAGATGTTTTCATTGTGTGGGACCAGACTGAATCACGACCAGTATCTGCTTTCAGGACATTTTCATAAATTCTTCGTTTCAATGTGCGACTTTATTGTGCCCTGGAACAAAGTCTCTTTAATGATGAAAAACAACTTGAAATACAGATATCAGATGGGCTGCGACTGCAAGATCTTCAGATGCACTGGAGAGCACTGTCTCCCCAACACGAAGAACGAGTGTATCCTGACAGGCCGGTCATCCTATTATTCACCTGCAGGCCCGGTTCATGATTACGCCTGTATCAGACACAGCAACGGCTCCTGCAGCTGGTACACAGGACCGGCCACACCGTCTGGAAATGACACCATGGACGTGTCTGATGTCTGAAGACCCAGAGCATGATCGCTTTCTGATTGTAAAAGAAGTTGCTTGATGCTGATTAGACGGTTCAAATATAGATACAAACAAGCATTTTAACCTCTTGCAACCACGCAGAACTAAATAGAAACCTCCCATAATACTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCATTAGAAATAACAGTACTGGATTATTAGCATGATGCTTTTACTTTTAGGTCCTGATTATATGATTTTCTATTTGAAAAAGGAATGAAGAGCAAAAAAAAAAAAAAAAAAATTTTTTGAATAAAATATGGCCAAAATCTGAAAGGCCATTTTCAACTGATTGGTCAATCCATTCCATCTTCTATAATGCCGTGAAATTAGGAAGATGCTGCAGTGGTCCTTTTCCACATTTACAGATCTAAATGAATCTTTAGCATTTTATCTGCATAATTTTGGCTTGCTGTAGTTTAATTCTTAAACGCATGAATGTTTCGTCAATCATTATTACATATACAGGTCTTTAGCGACCCGGATCTATATCTAACACGGATGGATCTCTAACTGATACAATAGCATAAAACTATCCTGATTTTTAAATAACAATTACAAAAGAATAAAAAAAAAAGCATATTTCGTTACGTTTTGGAACTTGGAAGGGTTCGATTTGAGCATCATCGCTGTCATCATCAGAGCTCATTTCCATTCACCATCTCAACCAAAACTATAATTTTCAGTTTCTTCAGAATCAATATTTTGATCACTGATAGCTTCTTCACCAGATCCACCATCAGCGACACCAATATTTGTTTGCGTAGGATAGCGAATGACATCCCGGGTCGATAAAGACCTTTAAGGGTCAATGTGTACTTTTTAAAAAAAAAAAAAAGTAAAACAACATGAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_05553430_05562372.mRNA True 2587 mRNA 0.24 5 5551558 5562448

Neighbor

gene id symbol gene type direction distance location
CI01000057_05486207_05495209 TAMM41 coding downstream 55901 5486040 ~ 5495657 (-)
CI01000057_05464070_05466835 NA coding downstream 82214 5464040 ~ 5469344 (-)
CI01000057_05442832_05459768 VGLL4 coding downstream 91790 5442784 ~ 5459768 (-)
CI01000057_05163258_05169859 NA coding downstream 381439 5162640 ~ 5170119 (-)
CI01000057_04927533_04931127 CDK4 coding downstream 620431 4927533 ~ 4931420 (-)
CI01000057_05633248_05635383 MKRN2OS.2 coding upstream 70767 5633215 ~ 5635898 (-)
CI01000057_05827116_05827514 NA coding upstream 264645 5827093 ~ 5827837 (-)
CI01000057_05830634_05838724 MYBL2, MYBL2B coding upstream 267610 5830058 ~ 5839047 (-)
CI01000057_05842522_05847302 IFT52 coding upstream 279871 5842319 ~ 5847302 (-)
CI01000057_05849700_05856513 SRSF6 coding upstream 286658 5849106 ~ 5856513 (-)
G246857 NA non-coding downstream 253470 5297832 ~ 5298088 (-)
G246780 NA non-coding downstream 267941 5086312 ~ 5283617 (-)
G246847 NA non-coding downstream 280205 5261892 ~ 5271353 (-)
G246793 NA non-coding downstream 458295 5063388 ~ 5093263 (-)
G246946 NA non-coding upstream 2074 5564522 ~ 5567290 (-)
G246950 NA non-coding upstream 5890 5568338 ~ 5888474 (-)
G246981 NA non-coding upstream 157343 5719791 ~ 5720606 (-)
G247041 NA non-coding upstream 300337 5862785 ~ 5886376 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 1653867 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 3630137 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 3746405 1801528 ~ 1806454 (-)
CI01000057_05925181_05926068 NA other upstream 361092 5923540 ~ 5927295 (-)

Expression


Co-expression Network