XLOC_010073 (gpn2)


Basic Information

Item Value
gene id XLOC_010073
gene name gpn2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33938227 ~ 33943728 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020019
GCATCACAATTCAAGCGTCATGTTGTCGTGAGTAAGGTAGTTCGCTGACTTTAAAGATGTAGCCTAGTTTGCTTCTTCACATAGAGGTGAACTTGTCTTCATCATGATGTCATCGGATCCTCCATCTCTGCGCTTCGGCCAGGTTGTGATTGGTCCGCCTGGTTCAGGTAAAACCACTTATTGTCGGGGCATGCAGGAGTTTCTGAGTCGCCTCGGGCGAAAGGTGGTCATTGTAAACCTCGATCCTGCCAACGAAGGCTTGCCTTATCCGTGTGCCGTGGACATAGCAGAGCTTGTAACTCTGGATGATGTGATGGACGGTCTAAAACTCGGCCCCAATGGTGGTCTCATCTACTCTATGGAATATTTGGAGGCAAATTTGGACTGGTTGGAGAACAAGCTGAAGCTGCATCATGACTGCTACTTTCTGTTTGACTGCCCAGGCCAAGTGGAACTGTACACTCATCACAATTCAGTGAAGAATATCTTTGCACAGCTGTCCAAGTGGAATTTCAGGCTGACTGCAGTGCATCTGGTGGATTCACATTACTGTGCTGATCCAGCTAAGTTCATCTCTGTGCTGTGCACATCTCTGTCCACCATGCTGCATGTTGAATTGCCACATGTAAATGTGCTGTCAAAAATGGACCTCATTGAGCAGTATGGAAAACTTGCCTTCAACCTGGACTTCTACACTGAGGTTCTGGATCTGTCATATCTGGTGGAGCATCTGTCTGCAGACCCTTTCTTCAAGAAATTTCACCACCTCAATGTGAAGTTGGCTGAAGTGATCCAGGACTACAGCTTGGTGTCTTTTGTACCTCTGAATGTGCAAgacaaggAAAGCATGATGCAAGTTCTGAGAACTGTGGACAAAGCCAATGGTTATTGCTTTGGAGATCTGGAGGAGAGGAACCTGCAAGCCATGATGTCTGCTGCTGTTGGAGCCGACTTCCAGTTCAGCACAACTCTTGGTGTACAGGAGAAATATCTGGATGCTACTAAGAACCATGTGGAGGATGAAGTTATGGACTTGTAGAACTTTTGGTatgaattaaaaaaggaaaaattagaaaaacacattttttaaatgtcttattgtTTTACACATTGAAAATATTACTGATAAAAATATAAGCAACAGAGTGAATTGATGTTTCCATTTctgaaaattaaaatgtttacattcacA
>TCONS_00020020
GCCTTATCCGTGTGCCGTGGACATAGCAGAGCTTGTAACTCTGGATGATGTGATGGACGGTCTAAAACTCGGCCCCAATGGTGGTCTCATCTACTCTATGGAATATTTGGAGGCAAATTTGGACTGGTTGGAGAACAAGCTGAAGCTGCATCATGACTGCTACTTTCTGTTTGACTGCCCAGGCCAAGTGGAACTGTACACTCATCACAATTCAGTGAAGAATATCTTTGCACAGCTGTCCAAGTGGAATTTCAGGCTGACTGCAGTGCATCTGGTGGATTCACATTACTGTGCTGATCCAGCTAAGTTCATCTCTGTGCTGTGCACATCTCTGTCCACCATGCTGCATGTTGAATTGCCACATGTAAATGTGCTGTCAAAAATGGACCTCATTGAGCAGTATGGAAAACTTGCCTTCAACCTGGACTTCTACACTGAGGTTCTGGATCTGTCATATCTGGTGGAGCATCTGTCTGCAGACCCTTTCTTCAAGAAATTTCACCACCTCAATGTGAAGTTGGCTGAAGTGATCCAGGACTACAGCTTGGTGTCTTTTGTACCTCTGAATGTGCAAGTCAGTGCTCACATTTGTAATTGTTATGACACACCCATGGATGTGTTCGTttataggtgtttttttttttaggacaaggAAAGCATGATGCAAGTTCTGAGAACTGTGGACAAAGCCAATGGTTATTGCTTTGGAGATCTGGAGGAGAGGAACCTGCAAGCCATGATGTCTGCTGCTGTTGGAGCCGACTTCCAGTTCAGCACAACTCTTGGTGTACAGGAGAAATATCTGGATGCTACTAAGAACCATGTGGAGGATGAAGTTATGGACTTGTAGAACTTTTGGTatgaattaaaaaaggaaaaattagaaaaacacattttttaaatgtcttattgtTTTACACATTGAAAATATTACTGATAAAAATATAAGCAACAGAGTGAATTGATGTTTCCATTTctgaaaattaaaatgtttacattcacA

Function

symbol description
gpn2 Predicted to enable GTPase activity. Orthologous to human GPN2 (GPN-loop GTPase 2).

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-86 Predicted to enable GTPase activity. Orthologous to human GPN2 (GPN-loop GTPase 2).

Ensembl:

ensembl_id ENSDARG00000103127

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020019 False 1192 mRNA 0.44 6 33938227 33943728
TCONS_00020020 True 1003 lncRNA 0.42 4 33939990 33943728

Neighbor

gene id symbol gene type direction distance location
XLOC_010072 snip1 coding upstream 303 33930864 ~ 33937924 (+)
XLOC_010071 gnl2 coding upstream 12350 33902006 ~ 33925877 (+)
XLOC_010070 BX530064.2 coding upstream 181848 33752102 ~ 33756379 (+)
XLOC_010069 fhl3a coding upstream 201396 33655890 ~ 33736831 (+)
XLOC_010068 pou3f1 coding upstream 342242 33593116 ~ 33595985 (+)
XLOC_010074 arid1aa coding downstream 9916 33953644 ~ 33986796 (+)
XLOC_010075 pigv coding downstream 44164 33987892 ~ 33990724 (+)
XLOC_010076 zdhhc18a coding downstream 48591 33992319 ~ 34006335 (+)
XLOC_010077 tent5ba coding downstream 103005 34046733 ~ 34056443 (+)
XLOC_010078 tcea3 coding downstream 168191 34111919 ~ 34135244 (+)
XLOC_010067 AL954832.1 non-coding upstream 594962 33343151 ~ 33343265 (+)
XLOC_010066 NA non-coding upstream 644447 33250490 ~ 33293780 (+)
XLOC_010065 NA non-coding upstream 723690 33180106 ~ 33214537 (+)
XLOC_010060 NA non-coding upstream 875068 33058899 ~ 33063159 (+)
XLOC_010080 NA non-coding downstream 372034 34315762 ~ 34321379 (+)
XLOC_010081 NA non-coding downstream 376161 34319889 ~ 34323007 (+)
XLOC_010082 NA non-coding downstream 535269 34478997 ~ 34502203 (+)
XLOC_010085 AL929184.1 non-coding downstream 780840 34724568 ~ 34724682 (+)
XLOC_010086 NA non-coding downstream 969556 34913284 ~ 34916253 (+)

Expression


Co-expression Network