G244594


Basic Information

Item Value
gene id G244594
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1165176 ~ 1167492 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU277642
TGAAGCAGTAGCATCTCGATGCCAGTCTCACCTTGTAATTTAAGGATTGGTTTATGTTGGTTTCATTTTAAAGTTTCTCACACGATTTGACTAATACTTAACAGGAAATCAGGTAGTGTCGTTACATTCATTACAACTTTATTTAATATTAATTTACGTGGTTTTCAAACATTGTATCCATATCGCTTGTTAGCTAATATTCCAAATTACTTTTTACACCATATAGTTCTTACAGAACGCAAAGTAAAGAAAAGCACAACACAGAAAATTTTAAGGAAAGCTACACAAATGCTCATCAAAATTAGTTGAATCTCATATATTTACAAACATTTACAATGTACTTGCTATTGTCGATTTTACAGTTTATGATAATACACGATAATGAATGATTAAAAAATGATTGTAGCCTATTTGGAAATTCCGCAATGTGTTTGGTCAAAGTCTGCATCACAGTCCCTTATACCTATAAACTTTCCAACATCCAAGATATCCAAACGATATTAGTATATCCCAACAATATACACTGAAGATAAAGACTGCAGCTGTCTGTCCAGTGGTTGCTTTCTTTGATCCATAATAGCCATCGTCCAATTCTAGGAACGTCATTTCTAGAAATAAACAGGTTTCCACAATTTTGGGGAAAGAGTAAATGGAGAGGCAAAACACGTTTCGCATTTAATTGAAATGTAACAGATTTTGGTGTTAATAAATTGTGCAAATTATGAAAGTTCGACAGGTAGCTTAATTATCATGTAGTAGAACATTATTTCACACTGAATGCTGTAGACCCTTTAATAAGGTGCTAAGACCGTCAGTTATGCTCCTTTTTTTCTGATGCTTCCTCTGCTTCTTCTTTGTCCGTGTCCTGGCCAGCTCCTACCGAGCCACTGTCATTGATGCTGGGTGTGAGATTGCTCTCCTTCTTCCACTTCATCCGGCGGTTCTGAAACCAAATTTTAATCTGGCGTTCCGACAGACACAACGCATTGGCGATTTCGATTCTTCTGCGTCTTGTCAAATAACGATTATAATGGAATTCTTTCTCTAGTTCTAAAGTTTGGTATCGCGAATAGATTTGGCGACCTCGCCGTCTGTCGGACCCATAGCCAACTCCTGTTAGGAAAGAGATTATTTGGTTAAAGTCAGAAGAAAAGGCTCCAAATATTGTACAACTAGGCTGTGTTCAAAAATAGGTTGGCTAATGTATATAAAGATCATTATATTCATCAAGCTAAACATTAGTTCACTGTCCCTTCCACTAACCTTCACGGACAATAATTCATAACGTTTAGGCTATTTATTCTTTTTGTAGACTAGAATAGATTTGGTTGAGCGTATGTTTCGGCCAAATGGATTTTTTTTCTGACGACAAAACGTGTTTAGTGTAGGGCAACAAGGAGTTTCATCAATGCTTTATGGGGTCATAAAACGACAGTAGTAAAAACAGGTCCGTCCTGTACTAAATATATCTCTTTTGTGACTATACTCACCACTGTGCGAGTTCATCCTCTGCATCCACGGATATATTTGAATACTTCCTTTCGGTTCCTGAGACGCAGTCTTGCCTTGGTCTGAAGCGTAATCCTGGGTCAATGAACCCTGTGTTTGCCCAATGCTTTGCCTGCAACTTGGAAGCACATCCTTGTCCTGGTAGAACACATTTGATCCGTACTCGTACGGTCCTCGGCTTGACCCGAACATAACGTTTTCTTGTGGCGAATAGAACGGATTGGAGTATATCCGGTTTTGGGCCACGGCTGCCCCATATGGCGAGAAGTGTCGCACCGGGTCATAGTTTGTCGAGCTGAGGGTAACATTGGACAGAACTTCTTGACCGCCGTTTAAATGGCATGAGAGCGACGGGTTCGTAAAATAGGAATTCATTCTTTCCTTTAAACGCCACTTTTTCCTCTTACTTCCTCCCTTAAATTACACACTCTCTTTTTCTCTCACACACTCTTTATCCTTATCAACCTATATCTTATTTCAAGTCTTTTATAAATACTTTATTATTTATCTCAGAACCCCAGCAGAGAATGTGCACTCAGCCTAATGTTTCCAAATCTTCGCTATAAGATTGACAAGATGCCAATGTCAGCTGACCACTCCAATAAAAGAAACAGGAAGCAACAATAAAAGTACGAATATAAGATGATCTTTTCTTTGCCCTGTTACAACAGCGTAGGGAAGGGAACATAACGCACGCACACCCCCTTATATTGAGA
>TU277643
CATAATTAAAAAGTTTTATTTTCTAAAAACATTGGGAGAAAAAAAAATCTCAACATCATATCAGTATAGGAGTAAATAGGCCCTGTAAGTTCTGAAGCAGTAGCATCTCGATGCCAGTCTCACCTTGTAATTTAAGGATTGGTTTATGTTGGTTTCATTTTAAAGTTTCTCACACGATTTGACTAATACTTAACAGGAAATCAGGTAGTGTCGTTACATTCATTACAACTTTATTTAATATTAATTTACGTGGTTTTCAAACATTGTATCCATATCGCTTGTTAGCTAATATTCCAAATTACTTTTTACACCATATAGTTCTTACAGAACGCAAAGTAAAGAAAAGCACAACACAGAAAATTTTAAGGAAAGCTACACAAATGCTCATCAAAATTAGTTGAATCTCATATATTTACAAACATTTACAATGTACTTGCTATTGTCGATTTTACAGTTTATGATAATACACGATAATGAATGATTAAAAAATGATTGTAGCCTATTTGGAAATTCCGCAATGTGTTTGGTCAAAGTCTGCATCACAGTCCCTTATACCTATAAACTTTCCAACATCCAAGATATCCAAACGATATTAGTATATCCCAACAATATACACTGAAGATAAAGACTGCAGCTGTCTGTCCAGTGGTTGCTTTCTTTGATCCATAATAGCCATCGTCCAATTCTAGGAACGTCATTTCTAGAAATAAACAGGTTTCCACAATTTTGGGGAAAGAGTAAATGGAGAGGCAAAACACGTTTCGCATTTAATTGAAATGTAACAGATTTTGGTGTTAATAAATTGTGCAAATTATGAAAGTTCGACAGGTAGCTTAATTATCATGTAGTAGAACATTATTTCACACTGAATGCTGTAGACCCTTTAATAAGGTGCTAAGACCGTCAGTTATGCTCCTTTTTTTCTGATGCTTCCTCTGCTTCTTCTTTGTCCGTGTCCTGGCCAGCTCCTACCGAGCCACTGTCATTGATGCTGGGTGTGAGATTGCTCTCCTTCTTCCACTTCATCCGGCGGTTCTGAAACCAAATTTTAATCTGGCGTTCCGACAGACACAACGCATTGGCGATTTCGATTCTTCTGCGTCTTGTCAAATAACGATTATAATGGAATTCTTTCTCTAGTTCTAAAGTTTGGTATCGCGAATAGATTTGGCGACCTCGCCGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU277642 False 2225 lncRNA 0.39 1 1165176 1167400
TU277643 True 1183 lncRNA 0.36 1 1166310 1167492

Neighbor

gene id symbol gene type direction distance location
CI01000057_01145522_01147560 NA coding downstream 17404 1144062 ~ 1147772 (-)
CI01000057_01083731_01092073 NA coding downstream 72545 1083714 ~ 1092631 (-)
CI01000057_00956994_00965947 NR1D4B coding downstream 199229 955633 ~ 965947 (-)
CI01000057_00938618_00949690 NA coding downstream 215397 938071 ~ 949779 (-)
CI01000057_00873279_00873578 NA coding downstream 291598 873274 ~ 873578 (-)
CI01000057_01189209_01190703 SMUG1 coding upstream 21421 1188913 ~ 1190703 (-)
CI01000057_01219430_01223491 HNRNPA1, HNRNPA1A coding upstream 51938 1219430 ~ 1223491 (-)
CI01000057_01235433_01244747 NA coding upstream 67685 1235177 ~ 1245182 (-)
CI01000057_01252690_01256408 ZNF740A coding upstream 85155 1252647 ~ 1256408 (-)
CI01000057_01261251_01262315 NA coding upstream 93194 1260686 ~ 1262315 (-)
G244524 NA non-coding downstream 136148 1008238 ~ 1029028 (-)
G244522 NA non-coding downstream 163829 1001123 ~ 1001347 (-)
G244516 NA non-coding downstream 213169 951714 ~ 952007 (-)
G244379 NA non-coding downstream 229317 933900 ~ 935859 (-)
G244475 NA non-coding downstream 293179 871777 ~ 871997 (-)
G244558 NA non-coding upstream 25453 1192945 ~ 1193239 (-)
G244606 NA non-coding upstream 29080 1196572 ~ 1196835 (-)
G244548 NA non-coding upstream 41006 1208498 ~ 1210749 (-)
G244610 NA non-coding upstream 95535 1263027 ~ 1263250 (-)
G244616 NA non-coding upstream 116636 1284128 ~ 1284855 (-)
G244358 NA other downstream 594148 570530 ~ 571028 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other upstream 634092 1801528 ~ 1806454 (-)
CI01000057_01904867_01921400 NA other upstream 752564 1904533 ~ 1921905 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 2724243 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 3761252 4927533 ~ 4931420 (-)
G246780 NA other upstream 4043618 5086312 ~ 5283617 (-)

Expression


Co-expression Network