G244548


Basic Information

Item Value
gene id G244548
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1208498 ~ 1210749 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU277593
TATAGGCCCATTATACTGTTGTATTATGTATTATACTTTCAGACACAATTTAGTGACAGTGTGTTGCTGGGGTTCGACACAGCAAAACTTCACAGATAAGAAATCAGTGACTAGTGGCTGAGAAAAATCTCCAAGAGGGAATTGTGGATTGTTAATTAATACTTTCCCAGGCACTTTTTTCTACAGTTTACTTGCACTTTCTGTTTTCAAAAAGTACAGAAGAAACAATGATCTGGCATTTTGATAATGCTTCTAAAAATAGCCTAGCAATTTTATTGGAGGCAAAAATGCCACCCAAAATACTAAAATCATTTATCATTATGTCCACGCGGTGGCGCCAGAGATCTTTAAAATGCTTATTGAGATTAGACATATAAATGCTAAAAATAAGCACTATTAATAACTTTTTTATATTACATTTCAGATTTCTACTGTGGCATTGTAAATGTTCTGTATCAATCTTTGGCTAATATCTCAGTCAACAAACTTGATCAGAGCAAAGTTGGTTTGGGGAACAGATGTTACTTTACCACTTGTATGAGTTATAACAGTGTCCCGCAGCAAGAGGAGCCTGTATTTTCTGATTCATTCATGAGCAGTGGGGAGTGTGGGATTGCATACTGACTTCATTTATCTCTGTCAGCCTCAGTTACTACTGGTACACACACATAAATAATTTTTCAAAGAATTGTAGTTCTGTCAACTTAATACTTTGCTTATTATTAGAACTAGCAAGTGCTTGACATCTTCATATATAGCTTCTGCAGTTACAAGCGAGAAGATTTCAGGGTTTCTGAACTTGATGTCAAACAGACTCTTTCTTGACTTTAGTCCTAAAACAAAACTGCAATAGGTTATACACTGGTCAAAAAAATTAAAGGAACACTTTGAAAACACATCAGATTTCAATGGGGAAAAATATCATGCTGGATATCTATACTGATATGGACTAGGTAATGTGTTAGGAATGAAAGGATTTCACATCGTTTGACGGAAATGAAAATTGTCAATCTACAGAGGACTGAATTCAAAGACAGCCCGAAAATCAAAGTGAAAAAATGATGCAGCAAGCTAGTCCATTTTGCTGAAATTTCATTGCAGCAACTCAAAATGGTACCCAGTAGTTTGTATGGCCCCCACGTGCTTGTATGCATGCCTGACAACGTTGGGGCATGCTCCTAATGAGACGACGGATGGTGTCCTGGGGGTATTTCCTCCCAGATCTGGACCAGGGCATCACTGAGCTCCTGGACAGTCTGAGGTGCAATCTGGCGGCGTCGGATGGACCGAAACTTAATGTCCCAGAGGGGTTCTATTGGATTTAGGTCAGGCGAGCGTGGGGGTCATTCAATGGTATAAATTCCTATATCCTCCAGGAACTGCCTGCATACTCTCACCACATGAGGCCGGGCATTGTCGTGTACCAGGAGGAACCCAGGACCCACTGCACCAGCGTAGGGTCTGACAATGGGTCCAAGGATTTCATCCCAATACCTAATGGCAGTCAGGGTGCCATTGTCTAGGCTGTAGAGATCTGTGCGTCCCTCCATGGATATGCCTCCCCAGATCATCACTGACCACCAAACCGGTCATGCTGAATGATGTTACAGGCAGCATAACGTTCTCCACGGCTTCTCCTGACCCCTTCGTGTCTGTCACATGCTCAGGGTGAACCTGCTCTCATCTGTGAAAAGCACAGGGCACCAGTGGCGGACCGGCCAATTCTGGTGTTCAATGGCAAATGCCAATTGAGCTGCATGGTGCTGGGCAGTGAGCACAGGACCCACTAGAGGACGTCGGGCCCTCAGGCCACCCTCATGAAGTCTGTTTCTGATTGTTTGGTCAGAGACATTCACACAAGTGGCCTACTGGTCATTTTGTGGGGCTCTGGCGGTGCTTATCCTGTTCCTCCTTGCACAAAGGAGCAGATACCGGTCCTGCTGATGGGTTAAGGACCTTCTATAGCCCTGTCCCAGTCTCCTCTATGCTCTTGAGACTGTGCTGGGAGACACAGCAAACCTTCTGGCAATGGCACATATTGATGTGCCATCCTGGAGGAGTTGGACTGCCTGTGCAACCTCTGTAGGGTCCAGGTATCGCCTCATGCCACCAGTAGTGACACTGACCCTAGCCAAATGCAAAACTAGTGAAAAATAGTCAGAAAAGATGAGTAGAGGAAAAAATGTCAGTGGCCTCCACCTGTAAAACCATTCCTGTTTTAGGGGTCGTCTCATTGTTGCCCATCTAGTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU277593 True 2252 lncRNA 0.44 1 1208498 1210749

Neighbor

gene id symbol gene type direction distance location
CI01000057_01189209_01190703 SMUG1 coding downstream 17795 1188913 ~ 1190703 (-)
CI01000057_01145522_01147560 NA coding downstream 60726 1144062 ~ 1147772 (-)
CI01000057_01083731_01092073 NA coding downstream 115867 1083714 ~ 1092631 (-)
CI01000057_00956994_00965947 NR1D4B coding downstream 242551 955633 ~ 965947 (-)
CI01000057_00938618_00949690 NA coding downstream 258719 938071 ~ 949779 (-)
CI01000057_01219430_01223491 HNRNPA1, HNRNPA1A coding upstream 8681 1219430 ~ 1223491 (-)
CI01000057_01235433_01244747 NA coding upstream 24428 1235177 ~ 1245182 (-)
CI01000057_01252690_01256408 ZNF740A coding upstream 41898 1252647 ~ 1256408 (-)
CI01000057_01261251_01262315 NA coding upstream 49937 1260686 ~ 1262315 (-)
CI01000057_01356170_01359401 NA coding upstream 144660 1355409 ~ 1359970 (-)
G244606 NA non-coding downstream 11663 1196572 ~ 1196835 (-)
G244558 NA non-coding downstream 15259 1192945 ~ 1193239 (-)
G244594 NA non-coding downstream 41006 1165176 ~ 1167492 (-)
G244524 NA non-coding downstream 179470 1008238 ~ 1029028 (-)
G244522 NA non-coding downstream 207151 1001123 ~ 1001347 (-)
G244610 NA non-coding upstream 52278 1263027 ~ 1263250 (-)
G244616 NA non-coding upstream 73379 1284128 ~ 1284855 (-)
G244618 NA non-coding upstream 75333 1286082 ~ 1286340 (-)
G244619 NA non-coding upstream 76298 1287047 ~ 1287383 (-)
G244633 NA non-coding upstream 112106 1322855 ~ 1323236 (-)
G244358 NA other downstream 637470 570530 ~ 571028 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other upstream 590835 1801528 ~ 1806454 (-)
CI01000057_01904867_01921400 NA other upstream 709307 1904533 ~ 1921905 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 2680986 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 3717995 4927533 ~ 4931420 (-)
G246780 NA other upstream 4000361 5086312 ~ 5283617 (-)

Expression


Co-expression Network