G244676



Basic Information


Item Value
gene id G244676
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1582943 ~ 1701880 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU277775
GCCGGGTGCAGTGGCGCGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGGCTGGAGGATCGCTTGAGCTCAGGGGTTCTGGGCTGCAGTGGACTATGTCGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCCCGGGTCCACCAGGTCGTCTAAGGAGGGGTGAACCGGCCCAGGTCGGAGACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGCGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAGCGATACAGCGAGACTCAGACTGGAGGATCGCTTGAGTTCAGGGGTTCTGGGCTGCAGTGGACTATGTCGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCCCGGGACCACCAGGTCGTCTAAGGAGGGGTGAACCGGCCCAGGTCGGANNNNNNNNNNGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCACCTGTGAATAGACACTGCAGTGTCTATTCACAGGTGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTCTCCGACCTGGGCCGGTTCACCCCTCCTTAGACGACCTGGTGGTCCCGGGCTCCCCCAGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGACATAGTCCACTGCAGCCCAGAACCCCTGAGCTCAAGTGATCCTCCAGCCTCAGCCTCCCAGTAGCTTGGATTACAGGCGCGCGCCACTGCACCCGGCGTCTGAGTCTCGCTGTATCGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTCTCCGACCTGGGCCGGTTCACCCCTCCTTAGACGACCTGGTGGTCCCGGGCTCCCCCAGGAGCACCATATCGATACCGAACTTAGTGCGGACACCTGATCGACATAGCCCACTGCAGCCCAGAACCCCTGAACTCAAGTGATCCTCCAGCCTCAGCCTCCTAGTAGCTTGGATTACAGGCACGCGCCACTGCACCCGGCGAGAGCGA
>TU277776
GCCGGGTGCAGTGGCGCGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGGCTGGAGGATCGCTTGAGCTCAGGGGTTCTGGGCTGCAGTGGACTATGTCGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCCCGGGTCCACCAGGTCGTCTAAGGAGGGGTGAACCGGCCCAGGTCGGAGACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGCGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAGCGATACAGCGAGNNNNTAATCCAAGCTACTGGGAGGCTGAGGCTGGAGGATCGCTTGAGTTCAGGGGTTCTGGGCTGCAGTGGACTATGTCGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCCCGGGACCACCAGGTCGTCTAAGGAGGGGTGAACCGGCCCAGGTCGGANNNNNNNNNNGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCACCTGTGAATAGACACTGCAGTGTCTATTCACAGGTGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTCTCCGACCTGGGCCGGTTCACCCCTCCTTAGACGACCTGGTGGTCCCGGGCTCCCCCAGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGACATAGTCCACTGCAGCCCAGAACCCCTGAGCTCAAGTGATCCTCCAGCCTCAGCCTCCCAGTAGCTTGGATTACAGGCGCGCGCCACTGCACCCGGCGTCTGAGTCTCGCTGTATCGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTCTCCGACCTGGGCCGGTTCACCCCTCCTTAGACGACCTGGTGGTCCCGGGCTCCCCCAGGAGCACCATATCGATACCGAACTTAGTGCGGACACCTGATCGACATAGCCCACTGCAGCCCAGAACCCCTGAACTCAAGTGATCCTCCAGCCTCAGCCTCCTAGTAGCTTGGATTACAGGCACGCGCCACTGCACCCGGCGAGAGCGA
>TU277777
GCCGGGTGCAGTGGCGCGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGGCTGGAGGATCGCTTGAGCTCAGGGGTTCTGGGCTGCAGTGGACTATGTCGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCCCGGGTCCACCAGGTCGTCTAAGGAGGGGTGAACCGGCCCAGGTCGGAGACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGCGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAGCGATACAGCGAGACTCAGACNNNNNNNNNNNNNNNTAATCCAAGCTACTGGGAGGCTGAGGCTGGAGGATCGCTTGAGTTCAGGGGTTCTGGGCTGCAGTGGACTATGTCGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCCCGGGACCACCAGGTCGTCTAAGGAGGGGTGAACCGGCCCAGGTCGGANNNNNNNNNNGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCACCTGTGAATAGACACTGCAGTGTCTATTCACAGGTGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTCTCCGACCTGGGCCGGTTCACCCCTCCTTAGACGACCTGGTGGTCCCGGGCTCCCCCAGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGACATAGTCCACTGCAGCCCAGAACCCCTGAGCTCAAGTGATCCTCCAGCCTCAGCCTCCCAGTAGCTTGGATTACAGGCGCGCGCCACTGCACCCGGCGTCTGAGTCTCGCTGTATCGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTCTCCGACCTGGGCCGGTTCACCCCTCCTTAGACGACCTGGTGGTCCCGGGCTCCCCCAGGAGCACCATATCGATACCGAACTTAGTGCGGACACCTGATCGACATAGCCCACTGCAGCCCAGAACCCCTGAACTCAAGTGATCCTCCAGCCTCAGCCTCCTAGTAGCTTGGATTACAGGCACGCGCCACTGCACCCGGCGAGAGCGA
>TU277765
GCCGGGTGCAGTGGCGCGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGGCTGGAGGATCGCTTGAGCTCAGGGGTTCTGGGCTGCAGTGGACTATGTCGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCCCGGGTCCACCAGGTCGTCTAAGGAGGGGTGAACCGGCCCAGGTCGGAGACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGCGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAGCGATACAGCGAGACTCAGACTTTTGGGAGGCTGAGGCTGGAGGATCGCTTGAGTTCAGGGGTTCTGGGCTGCAGTGGACTATGTCGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCCCGGGACCACCAGGTCGTCTAAGGAGGGGTGAACCGGCCCAGGTCGGANNNNNNNNNNGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCACCTGTGAATAGACACTGCAGTGCAGCCTGAGCGATACAGCGAGACTCAGACTTTTGTGTGCACAGTTATTCTGTGAACTTTATAAGCTAAACATTAGACAAAGCATTGTTGGTAATATTTACTGGTTGTTTAGGCTAAACCATGTCAGTTACTAGGGGAATTCATTATGTTTTGTTATCCTGTTGCACACATGTAATTCGTATGTTGATACTTTACAAACAAACATGTAATACAAACGTTTACAGTCTTTTTTTCAATTGCTAACAAGCATTTTTCAATACTGAAGCCACATTTTCAAAACATCAGTGAAACAGAAGTCTATGTGGACCAAACTGTGAATCATTTTTCATTGCTTTCA
>TU277771
GCCGGGTGCAGTGGCGCGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGGCTGGAGGATCGCTTGAGTTCAGGGGTTCTGGGCTGCAGTGGACTATGTCGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCCCGGGACCACCAGGTCGTCTAAGGAGGGGTGAACCGGCCCAGGTCGGANNNNNNNNNNGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCACCTGTGAATAGACACTGCAGTGCAGCCTGAGCGATACAGCGAGACTCAGACTTTTGTGTGCACAGTTATTCTGTGAACTTTATAAGCTAAACATTAGACAAAGCATTGTTGGTAATATTTACTGGTTGTTTAGGCTAAACCATGTCAGTTACTAGGGGAATTCATTATGTTTTGTTATCCTGTTGCACACATGTAATTCGTATGTTGATACTTTACAAACAAACATGTAATACAAACGTTTACAGTCTTTTTTTCAATTGCTAACAAGCATTTTTCAATACTGAAGCCACATTTTCAAAACATCAGTGAAACAGAAGTCTATGTGGACCAAACTGTGAATCATTTTTCATTGCTTTCA
>TU277774
GCCGGGTGCAGTGGCGCGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGGCTGGAGGATCGCTTGAGCTCAGGGGTTCTGGGCTGCAGTGGACTATGTCGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCCCGGGTCCACCAGGTCGTCTAAGGAGGGGTGAACCGGCCCAGGTCGGAGACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGCGGGATCGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGGCTGGAGGATCGCTTGAGTTCAGGGGTTCTGGGCTGCAGTGGACTATGTCGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCCCGGGACCACCAGGTCGTCTAAGGAGGGGTGAACCGGCCCAGGTCGGANNNNNNNNNNGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCACCTGTGAATAGACACTGCAGTGCAGCCTGAGCGATACAGCGAGACTCAGACTTTTGTGTGCACAGTTATTCTGTGAACTTTATAAGCTAAACATTAGACAAAGCATTGTTGGTAATATTTACTGGTTGTTTAGGCTAAACCATGTCAGTTACTAGGGGAATTCATTATGTTTTGTTATCCTGTTGCACACATGTAATTCGTATGTTGATACTTTACAAACAAACATGTAATACAAACGTTTACAGTCTTTTTTTCAATTGCTAACAAGCATTTTTCAATACTGAAGCCACATTTTCAAAACATCAGTGAAACAGAAGTCTATGTGGACCAAACTGTGAATCATTTTTCATTGCTTTCA

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU277775 False 1069 lncRNA 0.61 5 1582943 1701880
TU277776 False 1092 lncRNA 0.61 5 1582943 1701880
TU277777 False 1111 lncRNA 0.60 5 1582943 1701880
TU277765 False 863 lncRNA 0.50 3 1650491 1701880
TU277771 False 602 lncRNA 0.46 3 1650491 1701880
TU277774 True 826 lncRNA 0.50 3 1650491 1701880

Neighbor


gene id symbol gene type direction distance location
CI01000057_01559593_01572133 NA coding downstream 10093 1559547 ~ 1572850 (-)
CI01000057_01542990_01546030 SLC2A10 coding downstream 36913 1542797 ~ 1546030 (-)
CI01000057_01471460_01487413 NA coding downstream 95181 1471127 ~ 1487762 (-)
CI01000057_01356170_01359401 NA coding downstream 222973 1355409 ~ 1359970 (-)
CI01000057_01261251_01262315 NA coding downstream 320628 1260686 ~ 1262315 (-)
CI01000057_01707526_01708449 NA coding upstream 5615 1707495 ~ 1708449 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A coding upstream 99648 1801528 ~ 1806454 (-)
CI01000057_01904867_01921400 NA coding upstream 202653 1904533 ~ 1921905 (-)
CI01000057_02200951_02207673 CDK2.S, CDK2, MGC81499 coding upstream 498700 2200580 ~ 2207673 (-)
CI01000057_02248495_02254279 NA coding upstream 546466 2248346 ~ 2254318 (-)
G244747 NA non-coding downstream 1039 1581693 ~ 1581904 (-)
G244744 NA non-coding downstream 7570 1575153 ~ 1575373 (-)
G244740 NA non-coding downstream 12682 1570048 ~ 1570261 (-)
G244738 NA non-coding downstream 18434 1564221 ~ 1564509 (-)
G244736 NA non-coding downstream 19512 1563214 ~ 1563431 (-)
G244693 NA non-coding upstream 79868 1781748 ~ 1785550 (-)
G244805 NA non-coding upstream 116377 1818257 ~ 1818595 (-)
G244806 NA non-coding upstream 117763 1819643 ~ 1819987 (-)
G244807 NA non-coding upstream 119031 1820911 ~ 1821170 (-)
G244809 NA non-coding upstream 123404 1825284 ~ 1826279 (-)
G244358 NA other downstream 1011915 570530 ~ 571028 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 2189855 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 3226864 4927533 ~ 4931420 (-)
G246780 NA other upstream 3509230 5086312 ~ 5283617 (-)

Expression



Co-expression Network