XLOC_010089 (si:dkey-34d22.2)


Basic Information

Item Value
gene id XLOC_010089
gene name si:dkey-34d22.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35379720 ~ 35383122 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020042
GCAATTATTCGTAGCATACCCAAGTAACTTACCTGGAATGAAAAGTGACAATCCATCCATATAGTCTATGTTTTATACCGTCTGCTAATTGGCTACTTGTGGATATCCTTTGTTTTTTCTTAAGTGAAACGAAGTGTGTCTTAAATaataaagaaatgtatcattttaaaataatcatgATAGGGGACAATGCGACAGGAAAGTCATGCATGATGTATCGATACAGAAATGGCTGTTTTAAGCATATGGATTGTACCATTGGAATGGATTTTTGCGCTAAATCCCTAGAGATGGAACCTGGTGTAAATGTGAATCTACAAATTTGGGATACACCTGGTCATGAACGATTTTGGGATGCCATTCTAGCTTATATTCCTCGATCTGCTGGATGCCTGCTGGTGTTTGACCTGGGTAATCGCGAGACtttcaactttattaaatttCGGTACTCAGCAGTGCGTACAAAAGCACATCCATACAGTGTGCTGTTTGTGCTGGTGGGAAACAAGTGTGACAGTGAAGAACGAGAAGTGAGTCAAGAAGAGGTGGAAGAGTTCGCAAGTGAAGTTGGAGCTCCGTATATCGAGACCTCGGCTAAAACAGGTCATAATGTGACAGAAGCTTTTGAGCTGTTGACCCGCCACATTTATCAGGGTTTGATAAGTGGAGAATTGCATCTGCATGAAAGCTGCATTGGGAAAGATtgagaacaaaaataaatgaccAGTCAAGATGAGCCAGCTGAGCACAACAAATACTGTGCCACATGAAGTCAACAGGAAACTGCAGTTGGAGAatgttttctatatttttatattctgaaatatttttttatattatgttttttcaGTATTCCTGAAAAATTAACTTGCATGAAACTAAACTTCTATTATCTATTTTCAGTTAACACTTCCCTCTTACATGTCATATAAACTATATTGCGAATAAAAACGTTTATATCCAGAAATAAACAGTACAGGGTTGATCAACTTTTTAACCTGAATAATTATGGTTTTACACTCTACCCGTGTTTAAAATGTCAGTGAAATTTTGGAATTGTCCATTGTCAGAAGCAAATCAGTCAGCATTCAATAAATGCACTTCTAGAATTTCATTACAGATTTATAGTCATCATCATCATGGCTGATGTACAATATGATTCATGTACAAACGTACATCCATACACCTGCTTGTGGGACGCGTACACTAAAAAAGAACAGGAAGTGATTTAAGTTGAAGCAGAAAAGAGCATCAAGTACAAGTCACAAACAAAGTGAATCTAACAACTTTCCTTAAATTGCATTATTGTTTGGTTTTAAACTTGAGGATAGTAATTTTGAAGTTTTACAAGCAATTTTATCAGTCTGATATGACTGCTCAGTCTTTGGTCGTCATTGTCTGGTTCCCCTTTTTATCATGGGCCAAACATTTTCCAAAACAGATCTGAAACAGATCTGGACTGCAGGCCATGGGATACTACACCTCTGTAGCACATGCAGAATAAGCCTTATCGAACTAATAATCTTGATCTCAATATCTGTCTCTGTATCCCAATTTAGGCCTCCATGTTAATAGTACTCAGCACATGTATACCAGACACCCATGCTTTAGCTCTGCTGCTGCCCACACCATGACAGACGCATCATTTTCTATGGTTAAAAAATTAACCTGAGAAATTagattgttgatttttttattctttttgtatAACATGATGAACCATGATCCAAAGGATGCTCCTTTTATACCCACACAATGAAACCCTCACAAGGTTTGGCTAATTATTATGGAccatttcaaacctgtttgatctgaatattatatactgtattttgcttttgtactttttatatgaaataaaagttCAAGAATATTAccaaaaa

Function

symbol description
si:dkey-34d22.2 Predicted to enable GTP binding activity and GTPase activity. Predicted to be active in Golgi membrane.

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-261 Predicted to enable GTP binding activity and GTPase activity. Predicted to be active in Golgi membrane.

Ensembl:

ensembl_id ENSDARG00000100379

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020042 True 1883 mRNA 0.36 3 35379720 35383122

Neighbor

gene id symbol gene type direction distance location
XLOC_010088 si:dkey-34d22.1 coding upstream 155 35343493 ~ 35379565 (+)
XLOC_010087 CR385021.1 coding upstream 98932 35206855 ~ 35280788 (+)
XLOC_010086 NA coding upstream 463467 34913284 ~ 34916253 (+)
XLOC_010085 AL929184.1 coding upstream 655038 34724568 ~ 34724682 (+)
XLOC_010083 paqr7b coding upstream 846832 34522977 ~ 34532888 (+)
XLOC_010090 si:dkey-34d22.5 coding downstream 12475 35395597 ~ 35398512 (+)
XLOC_010091 rab42b coding downstream 18421 35401543 ~ 35405887 (+)
XLOC_010092 cited4b coding downstream 152049 35535171 ~ 35537491 (+)
XLOC_010093 NA coding downstream 172644 35555766 ~ 35556976 (+)
XLOC_010094 si:ch211-1i11.3 coding downstream 210663 35593785 ~ 35644767 (+)
XLOC_010082 NA non-coding upstream 877517 34478997 ~ 34502203 (+)
XLOC_010081 NA non-coding upstream 1056713 34319889 ~ 34323007 (+)
XLOC_010096 AL773558.2 non-coding downstream 342896 35726018 ~ 35726132 (+)
XLOC_010097 NA non-coding downstream 394553 35777675 ~ 35780839 (+)
XLOC_010098 NA non-coding downstream 432267 35815389 ~ 35817061 (+)
XLOC_010101 NA non-coding downstream 650296 36033418 ~ 36038394 (+)

Expression


Co-expression Network