XLOC_010091 (rab42b)


Basic Information

Item Value
gene id XLOC_010091
gene name rab42b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35401543 ~ 35405887 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020044
GCACCCACCCGTATGACTCTCACAACGACTCTTTTTTAGAAAAGCAGAGGAGTACTTAAGGAACTATgggtttatttttacatttgttcaCAATGAGAACTTCAAGGTAAAGGGTTCTCTGCTCAAACCTCCAAAGATCCTGGTGGAGTGACAGGTTTTAGTCAAACCTAGTGTATTGTTTACCTAAAGTCATGGATCTCACATTGTGGCAGTACCAGTTTCGGATCATCATGCTTGGAGACTCTACAGTTGGAAAGTCGTCCATGTTAAAGCGCTACACTGAGGACTTGTTTCTGGAATGCATCAATCAGACTGTCGGAGTGGACTTCTATGTACACTTCCTAGAGGTGGAACCTGGGGTGAGGGTTAAACTGCAGTTTTGGGACACAGCTGGTCAAGAGAGGTTTAGGTCTGTGACTCGATCCTACTACCGTAACTCTGTTGGAGGTCTCCTGGTGTTCGATCTGGGCAATCGCAAATCTTTTGAAAATGTGCGGGAATGGTACGCTGAGGTGTGTGAACGTGTGCATCCCTATACTGTGCTCTTCGTCCTGGTGGGACACAAGAGCGACCGCGTCAAAGGTGGAGAAAGAGCCGTGGACCGAACTGAAGCAGAAAAGTTGGCGAGCCAGCTGGGAGCCCCCTACATCGAGGCCTCGGCCAAAACGGGTCACAATGTGAAAGAAGCCTTCGACCTCTTGACCCGGCGGATTTATCAGGGCTTAAAAAGTGGCGAGATCCAGTTGCGCGAAGGGTGGGATGGCGTCAAAAGCTCAGCGCCTACAGCCCAAACCCTCCAGAAGTTACAAAACAATGAATCTGCTGAGAAAAAGAGCTGTACCTGTTAACTATTACAACACGTGGCTCTGTGTTTCAAAAGGATGGATACGTTTGACATTGCCCAATACACCTAAAAGTAAACCTCAAAGACTTGATGCAAGATTGTAGGTGTTAAATTCTACATAACATATGCACGATTTCAGAATTTGGAAACCAAATTGGAACTCTTGATTAAAGTCATTACCATACA
>TCONS_00020045
CAAGGTCTTTGGTATCCTAAAAACTTCCAGTGTTGAGACAAGTTCTCTGTAGAAAAACAGCCCTCCACGACAGTTTTGGACATTCTTGCCTAAATACCAATACTTAAGGTCAGGGGTTTTCAGTCCTGCTTTTGGAGAATGAGTGGCATCAATTTAAGCTTAAGCCTGCCCCAACGCACCTGTCAGGAAGTTTTATGCtaaccttgattagctggtttatgggtgtttattttggcttgaagTTAAACTTTGGTCGACATCAGAATACTCCTGCTCAAGATTTGGTTGATTTGTAGACAACTTTAGTGTGTTTAGTCATATGTTCATTGTCTAAAAACAGTTTACAGAAGTTGCGTTGCTTCTGTGAATCAGGATTGTGAAACATGACTCGTCACAGCAGCAAGTCTTCTCATGAAGCTTCCAAGAAAAATGTTGTCAGTCTACACAATAAATGGAATCACTGCCAGGCCCGAGTCCACTGGGGTGGGGTTCCACTTAATTGGCCCACACTGTAAACCACGCCAACTGTTCGGCCCACCCGGAGAGGCCCAAGGACCAACTAACATCAGAGACCTGGAGTTAGGCTGGTTCGTTGGTATGCACAGATGACCTTACAGAGCCAgctcacccaaaaaggaaaattctttcatcatttactcaaacaaAGAGTCATGGGTGGTCTGTGACTCGATCCTACTACCGTAACTCTGTTGGAGGTCTCCTGGTGTTCGATCTGGGCAATCGCAAATCTTTTGAAAATGTGCGGGAATGGTACGCTGAGGTGTGTGAACGTGTGCATCCCTATACTGTGCTCTTCGTCCTGGTGGGACACAAGAGCGACCGCGTCAAAGGTGGAGAAAGAGCCGTGGACCGAACTGAAGCAGAAAAGTTGGCGAGCCAGCTGGGAGCCCCCTACATCGAGGCCTCGGCCAAAACGGGTCACAATGTGAAAGAAGCCTTCGACCTCTTGACCCGGCGGATTTATCAGGGCTTAAAAAGTGGCGAGATCCAGTTGCGCGAAGGGTGGGATGGCGTCAAAAGCTCAGCGCCTACAGCCCAAACCCTCCAGAAGTTACAAAACAATGAATCTGCTGAGAAAAAGAGCTGTACCTGTTAACTATTACAACACGTGGCTCTGTGTTTCAAAAGGATGGATACGTTTGACATTGCCCAATACACCTAAAAGTAAACCTCAAAGACTTGATGCAAGATTGTAGGTGTTAAATTCTACATAACATATGCACGATTTCAGAATTTGGAAACCAAATTGGAACTCTTGATTAAAGTCATTACCATACACGTTTCC

Function

symbol description
rab42b Predicted to enable GTP binding activity and GTPase activity. Predicted to be active in Golgi membrane. Is expressed in adaxial cell; epidermis; intermediate cell mass of mesoderm; somite; and ventral mesoderm. Orthologous to human RAB42 (RAB42, member RAS oncogene family).

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-172 Predicted to enable GTP binding activity and GTPase activity. Predicted to be active in Golgi membrane. Is expressed in adaxial cell; epidermis; intermediate cell mass of mesoderm; somite; and ventral mesoderm. Orthologous to human RAB42 (RAB42, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000101170

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020044 False 1030 mRNA 0.46 2 35401543 35405880
TCONS_00020045 True 1306 processed_transcript 0.46 2 35402061 35405887

Neighbor

gene id symbol gene type direction distance location
XLOC_010090 si:dkey-34d22.5 coding upstream 3031 35395597 ~ 35398512 (+)
XLOC_010089 si:dkey-34d22.2 coding upstream 18421 35379720 ~ 35383122 (+)
XLOC_010088 si:dkey-34d22.1 coding upstream 21978 35343493 ~ 35379565 (+)
XLOC_010087 CR385021.1 coding upstream 120755 35206855 ~ 35280788 (+)
XLOC_010086 NA coding upstream 485290 34913284 ~ 34916253 (+)
XLOC_010092 cited4b coding downstream 129284 35535171 ~ 35537491 (+)
XLOC_010093 NA coding downstream 149879 35555766 ~ 35556976 (+)
XLOC_010094 si:ch211-1i11.3 coding downstream 187898 35593785 ~ 35644767 (+)
XLOC_010095 map7d1a coding downstream 255444 35661331 ~ 35776074 (+)
XLOC_010096 AL773558.2 coding downstream 320131 35726018 ~ 35726132 (+)
XLOC_010085 AL929184.1 non-coding upstream 676861 34724568 ~ 34724682 (+)
XLOC_010082 NA non-coding upstream 899340 34478997 ~ 34502203 (+)
XLOC_010081 NA non-coding upstream 1078536 34319889 ~ 34323007 (+)
XLOC_010097 NA non-coding downstream 371788 35777675 ~ 35780839 (+)
XLOC_010098 NA non-coding downstream 409502 35815389 ~ 35817061 (+)
XLOC_010101 NA non-coding downstream 627531 36033418 ~ 36038394 (+)

Expression


Co-expression Network