XLOC_010092 (cited4b)


Basic Information

Item Value
gene id XLOC_010092
gene name cited4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35535171 ~ 35537491 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020046
ATGTATATAAGCCCGTGGAGTTGacccagaaaacacacacacatacaatctcGTTGGAAGATAGTGAGCAGCGATCTTTTGTGCGTCGGAGTATGAAGCTTCACCTTGTGGAATATAAACTGTAATTCTTCGGAGGCTTTTGAAGAGATAAAGCTCGTTTGTCCTGCCGCAGCGGAGTCACATAGCAGAGGACACGGGgGAGAGTCTATGGCAGAGCACATGATGATGCCCATGAACCACGGCCAGGGAAACGGGGGTCTGCATGGCTACCGGATGGGCATGAATGGAGGCCTGCAGGCAGGCCCCCAGCAGCACATTCCCCAGTCTGGCTTGAGAGCCATGCCCAATGGACAGATGATGCACTATGGAGCGGGGCCTCAGGGAAACATGGAGGCCGCCATGCGCCAAAGGGCTAACATGGTGGGGCCTATGAATGGACAGATGGGTCACCACCGAATGCAGTCAACTAACATGATGTTCAACAACCAGGGCCAGCCACAGCAGCATCACGTTCAGCAGCATCAACAGCAGCATCAACAGCACCACCACATGCAGCAACAACAGCCTCAACCACCACcgccacaacaacaacaacaacaacagcagcaacagcagTATATGACCGGGGGTCTCACTTCCCAACAGCTCATGGCCAGCATGCACCTTCAGAAACTCAACACACAGTACCACGGGCACCCGTTGGGACACATGAATGGCAACCATATGGGAAATGGGGCGCAATTCCGCATGGGTCAGGCTCAGCTGAGCAACATGCAGCACATGCCCGGCCCAGCTCTCAGTCTTAATGGTATGGATGCTGATTTGATCGACGAAGAGGTTTTGACGTCGTTGGTCATGGAGCTAGGACTGGACCGGGTGCAAGAACTCCCTGAACTCTTCCTCGGACAAAACGAGTTTGACTTCATATCGGACTTTGTGAGCAAACAGCAGCCGAGCACCGTTAGCTGCTGAGACAGGACTGTTTGGACGCTTCGAGGCGGGATTTGATTATCAATATGGTTATTTTTGGGACCACCAGAACCAGAGGTGGCCAAATGCCTCTGTTCTCAGAAACGAGTGGTTAAGCTCCTGTCAGGACTACAGTTCTGCTTCTGGCTGGAACGCCAAAAAACAACGTTCCATGGATGAATGTAACAACACTTCAGAACTGTGAACTTGGTGCAATGTAAAGACACTCAAACATTTATTTGTCTTCGatgcagttttacatttaaaaatgtatttatttattgcttattcAGATGTATTAACATAGAACAAAAAAGCAGCAATGACCTTAAGAACCTGTGGTTTATGGGGCAACTGCCAAAATGGGATTGCTGAATTGTTCTCTTTGATTTAGACCCAAAAAATGTGTTCATCGACCCAAACCGTAAGTCTATTGTATGGTAAATGTTCAGTATACCCAAAACCACTGCTTGCTTACAATAGTCTTGATACAACTGATCTGTCTGAGCTTTAGAATTGCCTTAAATCaagttgcttttatttatttgttccccCAGTTCCCCAACAGTCCAAGAGGGCTCAAAACTATGTGTGACTTGTAATAAAGATGGCCAAGTTTTTAACTTTGGCCTAATTTTTCATcaa
>TCONS_00020047
GATTCAAAAAACGCTTGAGAAACTCACGGGCTGTGTTTCAAAACACCGTGTGCTGACTATGCGGACGGCATCAAAAGCGCGTGCAGCATTTCGAGCGCTTGCGATGTCTGAATGCTGTCTAGATAGGCAGCACACTAGGCTTTTGAAACGCCGCCGGTGTTTTAGGGCTCAGGGTGGTTGATCCATTGTTTGCTTCACTGCACGgGAGAGTCTATGGCAGAGCACATGATGATGCCCATGAACCACGGCCAGGGAAACGGGGGTCTGCATGGCTACCGGATGGGCATGAATGGAGGCCTGCAGGCAGGCCCCCAGCAGCACATTCCCCAGTCTGGCTTGAGAGCCATGCCCAATGGACAGATGATGCACTATGGAGCGGGGCCTCAGGGAAACATGGAGGCCGCCATGCGCCAAAGGGCTAACATGGTGGGGCCTATGAATGGACAGATGGGTCACCACCGAATGCAGTCAACTAACATGATGTTCAACAACCAGGGCCAGCCACAGCAGCATCACGTTCAGCAGCATCAACAGCAGCATCAACAGCACCACCACATGCAGCAACAACAGCCTCAACCACCACcgccacaacaacaacaacaacaacagcagcaacagcagTATATGACCGGGGGTCTCACTTCCCAACAGCTCATGGCCAGCATGCACCTTCAGAAACTCAACACACAGTACCACGGGCACCCGTTGGGACACATGAATGGCAACCATATGGGAAATGGGGCGCAATTCCGCATGGGTCAGGCTCAGCTGAGCAACATGCAGCACATGCCCGGCCCAGCTCTCAGTCTTAATGGTATGGATGCTGATTTGATCG
>TCONS_00020048
ggGAGAGTCTATGGCAGAGCACATGATGATGCCCATGAACCACGGCCAGGGAAACGGGGGTCTGCATGGCTACCGGATGGGCATGAATGGAGGCCTGCAGGCAGGCCCCCAGCAGCACATTCCCCAGTCTGGCTTGAGAGCCATGCCCAATGGACAGATGATGCACTATGGAGCGGGGCCTCAGGGAAACATGGAGGCCGCCATGCGCCAAAGGGCTAACATGGTGGGGCCTATGAATGGACAGATGGGTCACCACCGAATGCAGTCAACTAACATGATGTTCAACAACCAGGGCCAGCCACAGCAGCATCACGTTCAGCAGCATCAACAGCAGCATCAACAGCACCACCACATGCAGCAACAACAGCCTCAACCACCACcgccacaacaacaacaacaacaacagcagcaacagcagTATATGACCGGGGGTCTCACTTCCCAACAGCTCATGGCCAGCATGCACCTTCAGAAACTCAACACACAGTACCACGGGCACCCGTTGGGACACATGAATGGCAACCATATGGGAAATGGGGCGCAATTCCGCATGGGTCAGGCTCAGCTGAGCAACATGCAGCACATGCCCGGCCCAGCTCTCAGTCTTAATGGTATGGATGCTGATTTGATCGACGAAGAGGTTTTGACGTCGTTGGTCATGGAGCTAGGACTGGACCGGGTGCAAGAACTCCCTGAACTCTTCCTCGGACAAAACGAGTTTGACTTCATATCGGACTTTGTGAGCAAACAGCAGCCGAGCACCGTTAGCTGCTGAGACAGGACTGTTTGGACGCTTCGAGGCGGGATTTGATTATCAATATGGTTATTTTTGGGACCACCAGAACCAG

Function

symbol description
cited4b Predicted to enable transcription coactivator activity. Acts upstream of or within muscle cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including heart tube; mesoderm; nervous system; neural crest; and pharyngeal arch 3-7. Orthologous to human CITED4 (Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4).

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030425-5 Predicted to enable transcription coactivator activity. Acts upstream of or within muscle cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including heart tube; mesoderm; nervous system; neural crest; and pharyngeal arch 3-7. Orthologous to human CITED4 (Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4).

Ensembl:

ensembl_id ENSDARG00000101009

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020046 False 1614 mRNA 0.48 2 35535171 35537491
TCONS_00020047 False 835 mRNA 0.55 2 35535375 35536706
TCONS_00020048 True 848 mRNA 0.54 1 35536075 35536922

Neighbor

gene id symbol gene type direction distance location
XLOC_010091 rab42b coding upstream 129284 35401543 ~ 35405887 (+)
XLOC_010090 si:dkey-34d22.5 coding upstream 136659 35395597 ~ 35398512 (+)
XLOC_010089 si:dkey-34d22.2 coding upstream 152049 35379720 ~ 35383122 (+)
XLOC_010088 si:dkey-34d22.1 coding upstream 155606 35343493 ~ 35379565 (+)
XLOC_010087 CR385021.1 coding upstream 254383 35206855 ~ 35280788 (+)
XLOC_010093 NA coding downstream 18275 35555766 ~ 35556976 (+)
XLOC_010094 si:ch211-1i11.3 coding downstream 56294 35593785 ~ 35644767 (+)
XLOC_010095 map7d1a coding downstream 123840 35661331 ~ 35776074 (+)
XLOC_010096 AL773558.2 coding downstream 188527 35726018 ~ 35726132 (+)
XLOC_010097 NA coding downstream 240184 35777675 ~ 35780839 (+)
XLOC_010086 NA non-coding upstream 618918 34913284 ~ 34916253 (+)
XLOC_010085 AL929184.1 non-coding upstream 810489 34724568 ~ 34724682 (+)
XLOC_010082 NA non-coding upstream 1032968 34478997 ~ 34502203 (+)
XLOC_010081 NA non-coding upstream 1212164 34319889 ~ 34323007 (+)
XLOC_010098 NA non-coding downstream 277898 35815389 ~ 35817061 (+)
XLOC_010101 NA non-coding downstream 495927 36033418 ~ 36038394 (+)

Expression


Co-expression Network