G245966


Basic Information

Item Value
gene id G245966
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3013263 ~ 3322256 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU279195
GTCTGCCTCATCGACACGGAAGGCTCTCTTCTCTCATTAATTACATGAGCTGGGTGCTCAGGGAAAGTTCAGAGTGAAGATGTTCTAGTGTGTCCTCTTCGTGTTGTTGAGCGGTTTCGGGATCTTCGTCCTGAAGAGGTGGCAGATCTATTCATGACCACACAGAGAGTAGCCAATGGAATTGAGAAACACTTCCAGGCATCTTCCCTAACCATCGCCATACAGGACGGACCTGAGGCAGGACAGACGGTGAAGCTCCAGAAACATGACCGGGAAAGTGAGGATCTTCCTTCCAAATGGAGATCAGAAGAGGAGATGGCCAGAGAGGCGACAGAATTAAGCAGCCTCTTCAACTAGCTTCTTAGAGGTGGAAGACAAGCAGATGGAGGATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU279195 True 392 lncRNA 0.49 6 3013263 3322256

Neighbor

gene id symbol gene type direction distance location
CI01000057_02844117_02844398 NA coding downstream 166525 2843791 ~ 2846738 (-)
CI01000057_02838008_02838430 NA coding downstream 174801 2836677 ~ 2838785 (-)
CI01000057_02829879_02834139 NA coding downstream 179001 2829834 ~ 2834262 (-)
CI01000057_02807951_02821617 CCDC3B coding downstream 191470 2807766 ~ 2821793 (-)
CI01000057_02710209_02720000 NEK4 coding downstream 291688 2710164 ~ 2721575 (-)
CI01000057_03345268_03367172 NA coding upstream 22490 3344746 ~ 3368010 (-)
CI01000057_03428989_03429249 NA coding upstream 106416 3428672 ~ 3430374 (-)
CI01000057_03629306_03634635 NA coding upstream 306670 3628504 ~ 3634635 (-)
CI01000057_03847471_03851892 GAMT coding upstream 525049 3847305 ~ 3852121 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 coding upstream 564947 3887203 ~ 3892054 (-)
G245996 NA non-coding downstream 21929 2990992 ~ 2991334 (-)
G245130 NA non-coding downstream 109990 2903065 ~ 2903273 (-)
G245069 NA non-coding downstream 143855 2850820 ~ 2869408 (-)
G245035 NA non-coding downstream 325398 2687650 ~ 2687865 (-)
G246132 NA non-coding upstream 31176 3353432 ~ 3356706 (-)
G246136 NA non-coding upstream 39443 3361699 ~ 3397205 (-)
G245973 NA non-coding upstream 268536 3590792 ~ 3591597 (-)
G246248 NA non-coding upstream 273089 3595345 ~ 3595637 (-)
G245967 NA non-coding upstream 278347 3600603 ~ 3603196 (-)
CI01000057_01904867_01921400 NA other downstream 1091842 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 1208110 1801528 ~ 1806454 (-)
G244358 NA other downstream 2442235 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 1606488 4927533 ~ 4931420 (-)
G246780 NA other upstream 1888854 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 2601284 5923540 ~ 5927295 (-)

Expression


Co-expression Network