XLOC_010099 (thrap3a)


Basic Information

Item Value
gene id XLOC_010099
gene name thrap3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35870456 ~ 35901707 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020058
GTCACACCCCCTTCTGTGACTCTGAGTGAGCACATAAAGCTGCTTTACATCACCCGACTCGAATAGTTCACCCCATTCACGGGTTGAGATGCAGTTTGGTTAGGATATAAAACGACACGTTTGTCATTTGgagttaaaaacttttttttaatcattggGTTTGTTTGTAACGCGCAACGATTTAAACGCGGACTTCAGATGACGTGAACTGGATATCGCCGTCTTTGCGGTTACTTGTGAATGATATTGTTTACAAAACGAAAGGAAACCATTTCACTGACCTGTAACATTTGGCAGTAGCTGAATCCTCCCATCGTGGACTAAATCGAATTATAGGCACTTATGAGAGAGACTGCAAGCGACAATGTCTAAGACACAGAAATCAGAGTCCAGGTCTCGCTCTCGATCAGCCTCCAGATCAAGATCTCATTCTGATTCCCGTTCCCGCTCCAGATCTCAAAGCAGCTCCTCCAGATCCAGGACGAGGAAGCGCAGATATGGGTCTAGGTCTCGCTCTCGGTCAAGATCCCATTCCCCGCCCCACAACCGGGAGCGGAACCACACACGGGAGTATCAGAACCAACGAGAGTTTCGAGGTAACCACAGAGGATTCCGGAGGCCATATTACTTTCGGGGCAGAGGTCAGGGCTTTTTCCGTGGCCGCTTTCAACGTGGTGGAAGGGGAGGAGGATATAACAACTACCGTCCTAAAAACTGGCAGAACTTCCGGCAACAccctcagcagcagcagcagcaatacTACCACAACAGTCCCAAGAGGGGCCGCTCTCGCTCTCCTAAGAAACAGGCAAACAGTCCAAAATCCCGCAGCCATTCCCGGCGCTCTGACAGGTCATCTTCAGGGAGGTCACCACAGTCGCATCATTCATCCTCCTCCAACTCTGGATCTGCCAAACgtaattgtaaaaatgtaagaGAGGATGTTTTGGTTATCGAAGAAACACAAGGAGGAGGAGATAAGGCTCTGGTGGAGCAGGTCAAAGGTACTTCTGCAGCTGAGGGAAATGTTGATGTAGACCGGACTTTGGAGAACTGTCAGGTTTTGATGAACCATGACTCAAGTCCTAAAAGAACAAGTCCGCAGGTCTGCGTATCTGTCACTAATGACCAACCAATTGATTCTACATCCAGCAAGACCAGTCCTGCTCAAAAGAGTTCAAATTCTCCTAAAAAAGGTGCCACCGCCTGGCAGAATGTTGAAACTGCACCTTCAAACAGCAGCCCAGTAAAGAAAAGCACACCACCGGTTTTCAATGGTTTTGGGCTCTTTACAAATTTAGACCAAGAGTCAGATGATACACTTGCTCTCTCTGCTGCATTTATGAAATTCCTGGAGGAGCAAAAGGTTAAAAAACAGGCCTCTGCATTAGAAAACAACAGGCATAAAGGGAAAAGTAATGGAGATATAGTGTGTGATAAAGAAAATGGAGGAATATTTGATAAAGGCATTGAGTTGTCTCACGTTGTTGATCCTGACAACACAGCAGAGGGGAAATGCAAATCTGCCAAGAGTGGTGACAGTAACAAATTATCCAAAAGCGCACCTAAAAAGGCTCCTCGAAACAGCCCACCATTTCAATGCGAGGAAGGTGAGGATGATGAAGAAATGGAGTTTTCTGATATAGTGGAGGATATGGAAAATAGTCCCTGCAAAAGCAAAGTCACCATGTCTGCTCGTGAAATGTTCGAGAATCGCATCAGGAGGATGCAGGACATGACATGGGATGATGAGCTGGAAGCTCTGTTGCTCTGCCATAAACAGGAAAGAGCATCGAACATCCTAGCTGCGCTCTCTAAAAGAGACCAGCTCAGTGGCATGTTTAGGGATCCTTCCCCTGAAAAGCTTTCTAGTGTAAAACGAAAGGAGAAAACCACAGTAAGTTCCTCTTCTAAACCTACACTACCGCCCAGGAGGAGCTCTGAAAACCGTGAGCAGGAGATGTTTGTGGTTATGAACGAGGAATCCCCACCAAGAGCTTCATTGAAAAGAGGAAGCTGTGAATTCAGTGTGAGGATGGATTCTCTTAGTGATGACCTCGCCAGGACATCGGTTCTTACCAATGAAAGAAGGAATCTTATGGATTTTGTGCATATGGATAAAAAAGATTTGGAGTTTCAGTCTGTCCTTCGGCACCTTCAGGCTCAGCAGTTTCCCAGAAGCCCATCTGAGCTGTTTGCCCAACACATAGTTTCAATTGTTCATCACATTAAAGCTCAGTATTTTCCTTCCTCTGGACTGACCCTACATGACCGATTTGCCATGTACCAGAGAAGAGCTGCTGAGAAAGAATTCATGAAGCAGAGAAAGAGTCCAGAGATACACAGGAGAATTGATGTTTCTCCCAGTGCTTTTAAGAGGCACTCTCTTCTGTTTGATGAGGTGAAAAGCTCCATGGAAAACAGCTTCAAGGTCGATGGTAAAAAATCTAAAGGAGAAACAATGGACCTTCGGCTGGATATTGAGCGCAGGAAGAAATACTTGATTGGAGAGAGGGAGCCCAGAGAGGAAGAATGCGGAGGAAGAGTTTTGAGGGAATCTCCAGATTCAAGCAAGGAAATACCCACAGAGAAATcctcaaaaaaacacaaaaaatcaaAGAAAAGCAAGAAGAAACGTGAGCGTTCTCAGTCATCCTCCTCATCTTCGTCATCTTCCTCTGTTTACAATGAAGAAGAGGGTGAGATTAAGCCAGAAAGCTTCTCTAAAGTCCAGCTAGGGCTGAGAGAGTATGGAGAGGCTGTGGAAAGAGGCCGGCCACGAGGAGGCTTTCAGCTGAAAATACGTGGTAGAAGTTGGAACCGAGGAAATTTCCATGGAAACAGTAATGGCAATTCACACATGAACATGTTGGCAAAGAATGAAGGCTGGGATCAAGAATACACTCCCAAGAGCAAGAAACACATCCTACACAGTGAAAAAGATTTAGAAGCTGAAAGGAAGGTGATGAACTCACGAGGCCGTGGTCGCGGCAACATTATTCGTACAAAGGGACGTTTCCTACTGCGAAGGGCCACAAACACCACCAATAATACAAGCCCTAAATGGGCTCATGATAAATTCCAGGCCACCGATGATGAGGGCGAACAACAGAGAGAGGATGGGGAATAG
>TCONS_00020059
TCTTTCCATCCGCGCTCACTAGAGGAGATGCGAAGTCTCTCTCGCTCACTCTGAGACTATCATGTTGCTCTGTGCACTACCTTCTTACTCTTTATTCCAATGAAAAAACACATCAGGTCTAGGTCTCGCTCTCGGTCAAGATCCCATTCCCCGCCCCACAACCGGGAGCGGAACCACACACGGGAGTATCAGAACCAACGAGAGTTTCGAGGTAACCACAGAGGATTCCGGAGGCCATATTACTTTCGGGGCAGAGGTCAGGGCTTTTTCCGTGGCCGCTTTCAACGTGGTGGAAGGGGAGGAGGATATAACAACTACCGTCCTAAAAACTGGCAGAACTTCCGGCAACAccctcagcagcagcagcagcaatacTACCACAACAGTCCCAAGAGGGGCCGCTCTCGCTCTCCTAAGAAACAGGCAAACAGTCCAAAATCCCGCAGCCATTCCCGGCGCTCTGACAGGTCATCTTCAGGGAGGTCACCACAGTCGCATCATTCATCCTCCTCCAACTCTGGATCTGCCAAACgtaattgtaaaaatgtaagaGAGGATGTTTTGGTTATCGAAGAAACACAAGGAGGAGGAGATAAGGCTCTGGTGGAGCAGGTCAAAGGTACTTCTGCAGCTGAGGGAAATGTTGATGTAGACCGGACTTTGGAGAACTGTCAGGTTTTGATGAACCATGACTCAAGTCCTAAAAGAACAAGTCCGCAGGTCTGCGTATCTGTCACTAATGACCAACCAATTGATTCTACATCCAGCAAGACCAGTCCTGCTCAAAAGAGTTCAAATTCTCCTAAAAAAGGTGCCACCGCCTGGCAGAATGTTGAAACTGCACCTTCAAACAGCAGCCCAGTAAAGAAAAGCACACCACCGGTTTTCAATGGTTTTGGGCTCTTTACAAATTTAGACCAAGAGTCAGATGATACACTTGCTCTCTCTGCTGCATTTATGAAATTCCTGGAGGAGCAAAAGGTTAAAAAACAGGCCTCTGCATTAGAAAACAACAGGCATAAAGGGAAAAGTAATGGAGATATAGTGTGTGATAAAGAAAATGGAGGAATATTTGATAAAGGCATTGAGTTGTCTCACGTTGTTGATCCTGACAACACAGCAGAGGGGAAATGCAAATCTGCCAAGAGTGGTGACAGTAACAAATTATCCAAAAGCGCACCTAAAAAGGCTCCTCGAAACAGCCCACCATTTCAATGCGAGGAAGGTGAGGATGATGAAGAAATGGAGTTTTCTGATATAGTGGAGGATATGGAAAATAGTCCCTGCAAAAGCAAAGTCACCATGTCTGCTCGTGAAATGTTCGAGAATCGCATCAGGAGGATGCAGGACATGACATGGGATGATGAGCTGGAAGCTCTGTTGCTCTGCCATAAACAGGAAAGAGCATCGAACATCCTAGCTGCGCTCTCTAAAAGAGACCAGCTCAGTGGCATGTTTAGGGATCCTTCCCCTGAAAAGCTTTCTAGTGTAAAACGAAAGGAGAAAACCACAGTAAGTTCCTCTTCTAAACCTACACTACCGCCCAGGAGGAGCTCTGAAAACCGTGAGCAGGAGATGTTTGTGGTTATGAACGAGGAATCCCCACCAAGAGCTTCATTGAAAAGAGGAAGCTGTGAATTCAGTGTGAGGATGGATTCTCTTAGTGATGACCTCGCCAGGACATCGGTTCTTACCAATGAAAGAAGGAATCTTATGGATTTTGTGCATATGGATAAAAAAGATTTGGAGTTTCAGTCTGTCCTTCGGCACCTTCAGGCTCAGCAGTTTCCCAGAAGCCCATCTGAGCTGTTTGCCCAACACATAGTTTCAATTGTTCATCACATTAAAGCTCAGTATTTTCCTTCCTCTGGACTGACCCTACATGACCGATTTGCCATGTACCAGAGAAGAGCTGCTGAGAAAGAATTCATGAAGCAGAGAAAGAGTCCAGAGATACACAGGAGAATTGATGTTTCTCCCAGTGCTTTTAAGAGGCACTCTCTTCTGTTTGATGAGGTGAAAAGCTCCATGGAAAACAGCTTCAAGGTCGATGGTAAAAAATCTAAAGGAGAAACAATGGACCTTCGGCTGGATATTGAGCGCAGGAAGAAATACTTGATTGGAGAGAGGGAGCCCAGAGAGGAAGAATGCGGAGGAAGAGTTTTGAGGGAATCTCCAGATTCAAGCAAGGAAATACCCACAGAGAAATcctcaaaaaaacacaaaaaatcaaA
>TCONS_00020060
ATGAAAAAACACATCAGGTCTAGGTCTCGCTCTCGGTCAAGATCCCATTCCCCGCCCCACAACCGGGAGCGGAACCACACACGGGAGTATCAGAACCAACGAGAGTTTCGAGGTAACCACAGAGGATTCCGGAGGCCATATTACTTTCGGGGCAGAGGTCAGGGCTTTTTCCGTGGCCGCTTTCAACGTGGTGGAAGGGGAGGAGGATATAACAACTACCGTCCTAAAAACTGGCAGAACTTCCGGCAACAccctcagcagcagcagcagcaatacTACCACAACAGTCCCAAGAGGGGCCGCTCTCGCTCTCCTAAGAAACAGGCAAACAGTCCAAAATCCCGCAGCCATTCCCGGCGCTCTGACAGGTCATCTTCAGGGAGGTCACCACAGTCGCATCATTCATCCTCCTCCAACTCTGGATCTGCCAAACgtaattgtaaaaatgtaagaGAGGATGTTTTGGTTATCGAAGAAACACAAGGAGGAGGAGATAAGGCTCTGGTGGAGCAGGTCAAAGGTACTTCTGCAGCTGAGGGAAATGTTGATGTAGACCGGACTTTGGAGAACTGTCAGGTTTTGATGAACCATGACTCAAGTCCTAAAAGAACAAGTCCGCAGGTCTGCGTATCTGTCACTAATGACCAACCAATTGATTCTACATCCAGCAAGACCAGTCCTGCTCAAAAGAGTTCAAATTCTCCTAAAAAAGGTGCCACCGCCTGGCAGAATGTTGAAACTGCACCTTCAAACAGCAGCCCAGTAAAGAAAAGCACACCACCGGTTTTCAATGGTTTTGGGCTCTTTACAAATTTAGACCAAGAGTCAGATGATACACTTGCTCTCTCTGCTGCATTTATGAAATTCCTGGAGGAGCAAAAGGTTAAAAAACAGGCCTCTGCATTAGAAAACAACAGGCATAAAGGGAAAAGTAATGGAGATATAGTGTGTGATAAAGAAAATGGAGGAATATTTGATAAAGGCATTGAGTTGTCTCACGTTGTTGATCCTGACAACACAGCAGAGGGGAAATGCAAATCTGCCAAGAGTGGTGACAGTAACAAATTATCCAAAAGCGCACCTAAAAAGGCTCCTCGAAACAGCCCACCATTTCAATGCGAGGAAGGTGAGGATGATGAAGAAATGGAGTTTTCTGATATAGTGGAGGATATGGAAAATAGTCCCTGCAAAAGCAAAGTCACCATGTCTGCTCGTGAAATGTTCGAGAATCGCATCAGGAGGATGCAGGACATGACATGGGATGATGAGCTGGAAGCTCTGTTGCTCTGCCATAAACAGGAAAGAGCATCGAACATCCTAGCTGCGCTCTCTAAAAGAGACCAGCTCAGTGGCATGTTTAGGGATCCTTCCCCTGAAAAGCTTTCTAGTGTAAAACGAAAGGAGAAAACCACAGTAAGTTCCTCTTCTAAACCTACACTACCGCCCAGGAGGAGCTCTGAAAACCGTGAGCAGGAGATGTTTGTGGTTATGAACGAGGAATCCCCACCAAGAGCTTCATTGAAAAGAGGAAGCTGTGAATTCAGTGTGAGGATGGATTCTCTTAGTGATGACCTCGCCAGGACATCGGTTCTTACCAATGAAAGAAGGAATCTTATGGATTTTGTGCATATGGATAAAAAAGATTTGGAGTTTCAGTCTGTCCTTCGGCACCTTCAGGCTCAGCAGTTTCCCAGAAGCCCATCTGAGCTGTTTGCCCAACACATAGTTTCAATTGTTCATCACATTAAAGCTCAGTATTTTCCTTCCTCTGGACTGACCCTACATGACCGATTTGCCATGTACCAGAGAAGAGCTGCTGAGAAAGAATTCATGAAGCAGAGAAAGAGTCCAGAGATACACAGGAGAATTGATGTTTCTCCCAGTGCTTTTAAGAGGCACTCTCTTCTGTTTGATGAGGTGAAAAGCTCCATGGAAAACAGCTTCAAGGTCGATGGTAAAAAATCTAAAGGAGAAACAATGGACCTTCGGCTGGATATTGAGCGCAGGAAGAAATACTTGATTGGAGAGAGGGAGCCCAGAGAGGAAGAATGCGGAGGAAGAGTTTTGAGGGAATCTCCAGATTCAAGCAAGGAAATACCCACAGAGAAATcctcaaaaaaacacaaaaaatcaaAGAAAAGCAAGAAGAAACGTGAGCGTTCTCAGTCATCCTCCTCATCTTCGTCATCTTCCTCTGTTTACAATGAAGAAGAGGGTGAGATTAAGCCAGAAAGCTTCTCTAAAGTCCAGCTAGGGCTGAGAGAGTATGGAGAGGCTGTGGAAAGAGGCCGGCCACGAGGAGGCTTTCAGCTGAAAATACGTGGTAGAAGTTGGAACCGAGGAAATTTCCATGGAAACAGTAATGGCAATTCACACATGAACATGTTGGCAAAGAATGAAGGCTGGGATCAAGAATACACTCCCAAGAGCAAGAAACACATCCTACACAGTGAAAAAGATTTAGAAGCTGAAAGGAAGGTGATGAACTCACGAGGCCGTGGTCGCGGCAACATTATTCGTACAAAGGGACGTTTCCTACTGCGAAGGGCCACAAACACCACCAATAATACAAGCCCTAAATGGGCTCATGATAAATTCCAGGCCACCGATGATGAGGGCGAACAACAGAGAGAGGATGGGGAATAG

Function

symbol description
thrap3a Predicted to enable DNA binding activity and transcription coregulator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within RNA splicing. Predicted to be part of mediator complex. Is expressed in primitive heart tube and somite. Orthologous to human THRAP3 (thyroid hormone receptor associated protein 3).

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0008380 RNA splicing biological_process
GO:0016592 mediator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030219-79 Predicted to enable DNA binding activity and transcription coregulator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within RNA splicing. Predicted to be part of mediator complex. Is expressed in primitive heart tube and somite. Orthologous to human THRAP3 (thyroid hormone receptor associated protein 3).

Ensembl:

ensembl_id ENSDARG00000101989

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020058 False 3130 mRNA 0.46 11 35870456 35901707
TCONS_00020059 False 2234 mRNA 0.46 7 35887868 35896558
TCONS_00020060 True 2646 mRNA 0.46 10 35887967 35901707

Neighbor

gene id symbol gene type direction distance location
XLOC_010098 NA coding upstream 53395 35815389 ~ 35817061 (+)
XLOC_010097 NA coding upstream 89617 35777675 ~ 35780839 (+)
XLOC_010095 map7d1a coding upstream 94382 35661331 ~ 35776074 (+)
XLOC_010096 AL773558.2 coding upstream 144324 35726018 ~ 35726132 (+)
XLOC_010094 si:ch211-1i11.3 coding upstream 225689 35593785 ~ 35644767 (+)
XLOC_010100 sh3d21 coding downstream 3324 35905031 ~ 35938157 (+)
XLOC_010101 NA coding downstream 131711 36033418 ~ 36038394 (+)
XLOC_010102 sh3bp5b coding downstream 224603 36126310 ~ 36163508 (+)
XLOC_010103 NA coding downstream 310073 36211780 ~ 36218004 (+)
XLOC_010104 NA coding downstream 336764 36238471 ~ 36339909 (+)
XLOC_010093 NA non-coding upstream 313480 35555766 ~ 35556976 (+)
XLOC_010087 CR385021.1 non-coding upstream 589668 35206855 ~ 35280788 (+)
XLOC_010105 NA non-coding downstream 380553 36282260 ~ 36357102 (+)
XLOC_010106 NA non-coding downstream 444276 36345983 ~ 36348575 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_02817855_02829699 NA coding CI01000016 null 2817855 ~ 2830457 (-)
bowfin (Amia calva) AMCG00011005 NA coding CM030133.1 CM030133.1 7392972 ~ 7408696 (-)