XLOC_010100 (sh3d21)


Basic Information

Item Value
gene id XLOC_010100
gene name sh3d21
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35905031 ~ 35938157 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020061
TCTATCCTTCAGAGTGTAAACGTGTCTTGACTAGCtgggaggtgttttttttttcttaacaaggCTAATGTTTGACTAGAAAGAAGGAGGTCCGAGAAAGATTTCACTGTTTCTGGATTACCATTGAATCAAGCAGTGCAGTTCGCAGGGATTCATGCCACTTTAAGAAGCGAACAGAATCTACATCGTCTTATTGGTGGTCTGAGCACAGCTTTAAACAGGCCATGGAGGTGCTGGTGCTTCTAGGCTTTGAGGCCACGATGCCAGATGAGTTAACCGTGCATGTAGGGGATATAGTGAAGAACGTCTCCAAAGCCAAAGAGGAAGGATGGCTGGAGGGAGATCTGAGAGGAAAGAGAGGCATGTTCCCTGGCAACTTCGTCAAGGAAGTGCCTGTTTACTTAATAGGGGACAGCAACAGAGAGCCAAGAAGCATTAGGAAAACAAAGAAAACGACGGTCCAGACGAGGAAATGCGAGGTGGTTTTTCCCTACGTCCCCACACACGAGGACGAGCTGCAGCTGCTGGTCGGAGAGACCATCGAGATTCTCAGAGAGATTGAAGATGGGTGGTGGATGGGAAAGAAAAATAACCAAATAGGAGCCTTTCCATCCAATTTTGTAAAGGAAATTTTTGTCCCTTCAAAAGATGATGCCAAAGCCAGACCTAAGCTCTCTGGATCGGTCTTCGGTAAAGAGgGAAAGCTACAACAGAGACCAAGTTTACGGAAAAAAACGTCAAACGTGAAAGAATGCTGTCAGGTCATGTTCGACTACGCTGCTGTTGCCGAAGACGAGTTGAACCTGAAGAAGGGAGACGTCATAACAGTTATCAACAAGTCCACTGAGGATGATGGCTGGTGGGAGGGGGAAGTGAACGGACGCAGGGGCTTTTTTCCTGATAACTTCGTCATGCTGATCCCAGCGGAGACTCTTCAAACTGGGAATGCGGGCCAAGCACCGGTGAGAAGTGGCTCAAAGAAAGATTCAGAAAACCAGATGCCAGTGATGGACCAGAACAGCTCTGATACGAAACCAAAGACGGAGACTAAAATTGACAAACCAGACAATAAAGACTTCCGAAGTGACCCACCTGGTAAAATCAAGTTGCCTGGTCTGCACAAACCACCCGTTCCACCTCCACCAGTGAAGGACAAGGCCATAAAGAAGGATCCAAAAAATGCTGAAGAGCCACAGAAACAACCGCCGCCTCCTTCTCCAGTGCACAAAGAGGCTACAGAATCCCAGTCAGCACCTTCCAGTAAGACAGAGCCGGTGACTTCACCTTCTAAAATCCAGACTGACAGCAGATCAGCGGTTCAGGAGGACGGTGCGTCTCTGGCCTCGGTGCTAACTGAACTCAAGGAGCTCCGCATGTCTCTGGATCTGCTGAAAGCACAGCATGAGAGAGACATAAAGGAGCTGAAAGAAGAACTGAAAGACGAGACGGAGAAGCGCACCAGATTACAGGACGAAGTGACTGCCTTGAGGAAAAAACAGTGACCAGCGAACATCAGGAGAACTTCACAATCTCAGTGATCTTCTGAATATGGATACAGAAAGACAGTAATGCGGTGCTGAGTGGAATGTGAAGGTATGAGGAATCATATAGAAATCCAGCACTTGTGACTTGTTGAATACTTCCTGGTTCAGCAGACCAGAAATCTGATCTCCATTCAGACGGCAATCAAACTACAACAACACCTCTTCTTTCTTACATAAATCAGCTCATTTGGTTATGGGAGCTCTCTCTCGGTTTGCTTCTTGagactcatatatatatatatgtgcattttGAAATATGTAAATATCAAATACTGAATGTCTTATATTTCCGTGGACATTTAGGGTGAAACTAGGTCATGTTTCAAAGTATTTAACactttctgttgttgttgttattatgtttctgttttgtggcTGTACTCTATAGAATCTCAATCAATAAATATTGGCATTtatattgctaacatgttttactcCAAAA
>TCONS_00020062
TCAGGTCATGTTCGACTACGCTGCTGTTGCCGAAGACGAGTTGAACCTGAAGAAGGGAGACGTCATAACAGTTATCAACAAGTCCACTGAGGATGATGGCTGGTGGGAGGGGGAAGTGAACGGACGCAGGGGCTTTTTTCCTGATAACTTCGTCATGCTGATCCCAGCGGAGACTCTTCAAACTGGGAATGCGGGCCAAGCACCGGTGAGAAGTGGCTCAAAGAAAGATTCAGAAAACCAGATGCCAGTGATGGACCAGAACAGCTCTGATACGAAACCAAAGACGGAGACTAAAATTGACAAACCAGACAATAAAGACTTCCGAAGTGACCCACCTGGTAAAATCAAGTTGCCTGGTCTGCACAAACCACCCGTTCCACCTCCACCAGTGAAGGACAAGGCCATAAAGAAGGATCCAAAAAATGCTGAAGAGCCACAGAAACAACCGCCGCCTCCTTCTCCAGTGCACAAAGAGGGTCCTGCTGAAACTGACTGCAGCAAACCTTCAGAGGAGAAGGATGGAGCACCACAACATATTCCAGAGGCTACAGAATCCCAGTCAGCACCTTCCAGTAAGACAGAGCCGGTGACTTCACCTTCTAAAATCCAGACTGACAGCAGATCAGCGGTTCAGGAGGACGGTGCGTCTCTGGCCTCGGTGCTAACTGAACTCAAGGAGCTCCGCATGTCTCTGGATCTGCTGAA
>TCONS_00020063
TCTTCAAGTGAGTGTGGGACAGAGAAATGTTCCCATGATTAGCCCATTTTTGTGCTCTTAGAGAATGGGAGTCTCCCTTTTGTCAACATTGCTTTTTTAGTAAAACACACTGGCTCAGAAAGCAATTATAGGCCAAGGAAATTCATGCTAGTTTACAAATAGTTTTAAGATGGAGCAGACTGCAGGTCTTAAATCTGTTTTTAACGCCTTGGTCCAATCTGTGAGGATAAAACACAGTTAACTTTAATATATGACAGTTTTTTTCTTCCTGTTACTTGTGCTTATTAAAAGAAATTGACTCAGAGGTTTCCTTTAGAGGAGAGGAACACTAAAAACGGTCACTTGATTCCTCCTGCATGGAAAGACTGCGAGCTTTATCTTTCTCAGAAGGACTAATCTGTATTTTGTTGACCATTTTTGTGAATCAGACTGGGAATGCGGGCCAAGCACCGGTGAGAAGTGGCTCAAAGAAAGATTCAGAAAACCAGATGCCAGTGATGGACCAGAACAGCTCTGATACGAAACCAAAGACGGAGACTAAAATTGACAAACCAGACAATAAAGACTTCCGAAGTGACCCACCTGGTAAAATCAAGTTGCCTGGTCTGCACAAACCACCCGTTCCACCTCCACCAGTGAAGGACAAGGCCATAAAGAAGGATCCAAAAAATGCTGAAGAGCCACAGAAACAACCGCCGCCTCCTTCTCCAGTGCACAAAGAGGTAAAAGACATTAAGGAGGTTAAAGATAAGACCCCTGACCAGTTTGATGGTGTAGAC
>TCONS_00020064
TCAGACTGGGAATGCGGGCCAAGCACCGGTGAGAAGTGGCTCAAAGAAAGATTCAGAAAACCAGATGCCAGTGATGGACCAGAACAGCTCTGATACGAAACCAAAGACGGAGACTAAAATTGACAAACCAGACAATAAAGACTTCCGAAGTGACCCACCTGGTAAAATCAAGTTGCCTGGTCTGCACAAACCACCCGTTCCACCTCCACCAGTGAAGGACAAGGCCATAAAGAAGGATCCAAAAAATGCTGAAGAGCCACAGAAACAACCGCCGCCTCCTTCTCCAGTGCACAAAGAGGTAAAAGACATTAAGGAGGTTAAAGATAAGACCCCTGACCAGTTTGATGGTGTAGACGTGTCCTCAGAGAAACTGAGCCATCCCACGGCCAACAGAGCTAAACCTCCACAGAGGAGACCACCAACAGCCCTCGCCACTGCTATACAAGCTACAGAATCCCAGTCAGCACCTTCCAGTAAGACAGAGCCGGTGACTTCACCTTCTAAAATCCAGACTGACAGCAGATCAGCGGTTCAGGAGGACGGTGCGTCTCTGGCCTCGGTGCTAACTGAACTCAAGGAGCTCCGCATGTCTCTGGATCTGCTGAAAGCACAGCATGAGAGAGACATAAAGGAGCTGAAAGAAGAACTGAAAGACGAGACGGAGAAGCGCACCAGATTACAGGACGAAGTGACTGCCTTGAGGAAAAAACAGTGACCAGCGAACATCAGGAGAACTTCACAATCTCAGTGA
>TCONS_00020065
GGACCAGAACAGCTCTGATACGAAACCAAAGACGGAGACTAAAATTGACAAACCAGACAATAAAGACTTCCGAAGTGACCCACCTGGTAAAATCAAGTTGCCTGGTCTGCACAAACCACCCGTTCCACCTCCACCAGTGAAGGACAAGGCCATAAAGAAGGATCCAAAAAATGCTGAAGAGCCACAGAAACAACCGCCGCCTCCTTCTCCAGTGCACAAAGAGGTAAAAGACATTAAGGAGGTTAAAGATAAGACCCCTGACCAGTTTGATGGTGTAGACGTGTCCTCAGAGAAACTGAGCCATCCCACGGCCAACAGAGCTAAACCTCCACAGAGGAGACCACCAACAGCCCTCGCCACTGCTATACAAGGTCCTGCTGAAACTGACTGCAGCAAACCTTCAGAGGAGAAGGATGGAGCACCACAACATATTCCAGAGGCTACAGAATCCCAGTCAGCACCTTCCAGTAAGACAGAGCCGGTGACTTCACCTTCTAAAATCCAGACTGACAGCAGATCAGCGGTTCAGGAGGACGGTGCGTCTCTGGCCTCGGTGCTAACTGAACTCAAGGAGCTCCGCATGTCTCTGGATCTGCTGAAAGCACAGCATGA

Function

symbol description
sh3d21 Is expressed in corneal epithelium. Orthologous to human SH3D21 (SH3 domain containing 21).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-051120-57 Is expressed in corneal epithelium. Orthologous to human SH3D21 (SH3 domain containing 21).

Ensembl:

ensembl_id ENSDARG00000099448

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020061 False 1986 mRNA 0.45 16 35905031 35938157
TCONS_00020062 False 705 mRNA 0.51 8 35916371 35933266
TCONS_00020063 False 779 lncRNA 0.42 4 35918039 35927160
TCONS_00020064 False 751 mRNA 0.50 7 35918463 35937709
TCONS_00020065 True 612 mRNA 0.50 5 35924188 35933278

Neighbor

gene id symbol gene type direction distance location
XLOC_010099 thrap3a coding upstream 3324 35870456 ~ 35901707 (+)
XLOC_010098 NA coding upstream 87970 35815389 ~ 35817061 (+)
XLOC_010097 NA coding upstream 124192 35777675 ~ 35780839 (+)
XLOC_010095 map7d1a coding upstream 128957 35661331 ~ 35776074 (+)
XLOC_010096 AL773558.2 coding upstream 178899 35726018 ~ 35726132 (+)
XLOC_010101 NA coding downstream 95261 36033418 ~ 36038394 (+)
XLOC_010102 sh3bp5b coding downstream 188153 36126310 ~ 36163508 (+)
XLOC_010103 NA coding downstream 273623 36211780 ~ 36218004 (+)
XLOC_010104 NA coding downstream 300314 36238471 ~ 36339909 (+)
XLOC_010105 NA coding downstream 344103 36282260 ~ 36357102 (+)
XLOC_010093 NA non-coding upstream 348055 35555766 ~ 35556976 (+)
XLOC_010087 CR385021.1 non-coding upstream 624243 35206855 ~ 35280788 (+)
XLOC_010106 NA non-coding downstream 407826 36345983 ~ 36348575 (+)

Expression


Co-expression Network