Gene
RNA
| Item | Value |
|---|---|
| gene id | G246573 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000057 |
| NCBI id | null |
| chromosome length | 6014843 |
| location | 4424980 ~ 4426373 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU279842 | True | 1150 | lncRNA | 0.39 | 3 | 4424980 | 4426373 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000057_04210090_04214161 | NA | coding | downstream | 210819 | 4209916 ~ 4214161 (-) |
| CI01000057_04195849_04198909 | NDUFA11 | coding | downstream | 226071 | 4195795 ~ 4198909 (-) |
| CI01000057_04145896_04146600 | NRTN | coding | downstream | 278190 | 4145264 ~ 4146790 (-) |
| CI01000057_04055321_04058726 | POLE4 | coding | downstream | 365911 | 4055291 ~ 4059069 (-) |
| CI01000057_04042903_04046286 | CCL44 | coding | downstream | 378660 | 4042770 ~ 4046320 (-) |
| CI01000057_04455612_04467173 | DDX49, DDX49.S | coding | upstream | 28661 | 4455034 ~ 4467217 (-) |
| CI01000057_04467496_04467864 | NA | coding | upstream | 41100 | 4467473 ~ 4468001 (-) |
| CI01000057_04512368_04525620 | COMP | coding | upstream | 85504 | 4511877 ~ 4525620 (-) |
| CI01000057_04543887_04545600 | NA | coding | upstream | 116498 | 4542871 ~ 4546001 (-) |
| CI01000057_04560576_04573644 | NA | coding | upstream | 133267 | 4559640 ~ 4573644 (-) |
| G246559 | NA | non-coding | downstream | 4708 | 4419322 ~ 4420272 (-) |
| G246519 | NA | non-coding | downstream | 79239 | 4344210 ~ 4345741 (-) |
| G246289 | NA | non-coding | downstream | 141871 | 4280578 ~ 4283109 (-) |
| G246292 | NA | non-coding | downstream | 146030 | 4277399 ~ 4278950 (-) |
| G246497 | NA | non-coding | downstream | 162431 | 4261874 ~ 4262549 (-) |
| G246595 | NA | non-coding | upstream | 8440 | 4434813 ~ 4443814 (-) |
| G246588 | NA | non-coding | upstream | 23629 | 4450002 ~ 4460264 (-) |
| G246609 | NA | non-coding | upstream | 58536 | 4484909 ~ 4485182 (-) |
| G246611 | NA | non-coding | upstream | 60939 | 4487312 ~ 4497669 (-) |
| G246617 | NA | non-coding | upstream | 69214 | 4495587 ~ 4496458 (-) |
| CI01000057_03887278_03892054 | ABHD8B, ABHD8 | other | downstream | 527289 | 3887203 ~ 3892054 (-) |
| CI01000057_01904867_01921400 | NA | other | downstream | 2503559 | 1904533 ~ 1921905 (-) |
| CI01000057_01801708_01806454 | LHFPL5, LHFPL5A | other | downstream | 2619827 | 1801528 ~ 1806454 (-) |
| G244358 | NA | other | downstream | 3853952 | 570530 ~ 571028 (-) |
| CI01000057_04927533_04931127 | CDK4 | other | upstream | 502371 | 4927533 ~ 4931420 (-) |
| G246780 | NA | other | upstream | 784737 | 5086312 ~ 5283617 (-) |
| CI01000057_05925181_05926068 | NA | other | upstream | 1497167 | 5923540 ~ 5927295 (-) |
