XLOC_010104


Basic Information

Item Value
gene id XLOC_010104
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36238471 ~ 36339909 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021732
TAAGAACAGTAAGCTGTAAATGATGTTGTAATATTATTACCATTAAGGCTGTTGGCCATGTTTGTAGGTAGTCTCTTAACCTAGataatttttaaatctttttatagTAAGCAACAATgataaaataatgctaatgttaCTTTTTTGTGTTTGATGATGTCAAATATAGGGAGATGATAAGCACTTTAAACCCCAGATATCAGTCCCCCAGCCGAGACATGCTCTCAAATACCCTCATACCTGCagttgaaaaagaaaatatcaagaAAGAGTTGCAAGATGTGAGAGATGTGGCTGTGACTGCTGATGGCTGGATCAGCATTGCACAGGACCACTACCTGACAGTGTCACTTCACTTTGTCAGAGAGGGTTCCATGAAAGAGAGGGTCCTACATACAAGGGCAGTATACACATCCCAGACAGGGGACATTTTAGCAGAAGAGAGGAGAGATATTATTGATGAATTTAATATAAAGGATAGAGTAGTTGCTGTGACAATGCAGCAAACATGGATGTAGCAGTAAAAAGAGATGAGTATTAAAAAAATTGGCTGCTTTGCTCACACTCTCAATATTGCTGCTCAGAAGCTTTCCACAATTACCTCAGTCTCACAGTGGGCAGGAAGGATCAGAGCAATGGTGGTGTGGCTGAAAAGATCCACCCTGGCTAAACCTATCCTTAAAGAGAAGCAGCATCCTCTCCGTAGGTAGAAATCAGAATAGATGAACCTTAGTGCAAAACTCTTTGGCCAAATAGTTAATAAAAATCCTTTGCTAAATCATGCAGTAAAACATTTCTGCAAATAAACAGCCACTTTGAtaaccacacaaacacaaacataaattTCTCTTTCCCATTTTAGGTCTTCCAGAACATGCCGTCATCCTTGATGTGAAAACAAGGTGGAATAGCTTATTCCTCATGGTGGAGCGATTCCTAGAGCAGTTCCCTGCCTTCCAGGCCACCTCCATGGACCATCgtcttaagaaattaatggaCAAGGACAGACTGCAGAGAATTTCTGATGAGGATTTTAGAAAAGCAGAAGAGTTTGTCAAAATTACAAAGATACTTTACACTTCAACCCTCTGCGTCTCTGCTGAAAGGAGCCAAAACTTGGGTCAGATTCTGCCTATCTTAAGTAAGCTCCAGCACCACTTCACAGTGAATAAAGAGGACTCCTCCTTCACAAAGACCATCAAGGACACTATCTGGAATGACCTCTCAAAAAGATACCAGGGATGGAGGAGGGCACAGCCTTGCATCCCAGATTCAAGTCAAAAGTGA
>TCONS_00021733
ACTGCAGAGAATTTCTGATGAGGATTTTAGAAAAGCAGAAGAGTTTGTCAAAATTACAAAGATACTTTACACTTCAACCCTCTGCGTCTCTGCTGAAAGGAGCCAAAACTTGGGTCAGATTCTGCCTATCTTAAGTAAGCTCCAGCACCACTTCACAGTGAATAAAGAGGACTCCTCCTTCACAAAGACCATCAAGGACACTATCTGGAATGACCTCTCAAAAAGATACCAGGGATGGAGGAGGGCACAGCCTTGCATCCCAGATTCAAGTCAAAAGTGACAAATGAAGTGTGGACCAGACTGAAGGAGGAGCTAATGAAAAGGACCTTAGAACAGGTGTTACTTCATATTGTAGGAGGAAGAGGAGTGAAGAGGAAAGCGGAGGatgattttcacagtattttaggTGAAGGCAAACCATACGCTTTGCGGAAACGCATCAGAGTTGCAGAGCTGGAGAACACAAGAGACACAGAGATGAGCAGCTATCAAGAGAAAACCAGCTCAGGAGGAAGAGGAGTGAAGCGGAAAGCGGATGATGATTTTCACAGTGTTTTAGGTGAAGGTAAACCTTATGCACTGCGCAAACGCATCAAAGTTGCTGAGCTGGAGAACACAAGAGTGGACGCCGACACAGAGGCGTCCAGCTCAGGTCAGTCCACTCTTTATGActggagaaatactggaaaactgGAGCACTGCTGCCATTCGTTAAATCCCAGAGTAAAATAAATGCCAATTAATGAAATAATcgattattaataattcattattgaCTGTAATCCACATCAGGAGGAAGAGGAGTGAAGAGGAAAGCGGATGATGATTTTCACAGTGTTTTACACACAGTTTTACTCACAgtagtctacaggtgtccagggacaggctctacaatggtttaagtcatacttaactgaccgctaccagtttgtgaatctaaatggacagccttcacaaatctgcccagtaaagtatggggtgcctcaaggatcagttttaggccctttactgtttacaatttacatgctacctctgggagacattattagaagacatgggatcagctttcactgctaaatatgcagatgatactcaattatatatttcaactaaacctgacgagacgtctgaactttctaaactaactgagtgtatcaaagacatcaaagactggatgaccaacaattttcttctcttaaactccgacaaaacagaattatcacttattgggcctaaatcttgcacacagcagatctcgcaactcaatttacaattagagggatacaaagttagctttagctctactataaaagatttgggtgtcatattagacagcaatctaacttttaaaaaccatatatcccatgtcacaaaaactgccttctttcatctgagaaatatcactaaattacgaaatatgctatccatctcagatgcagaaaagctagtccatgcttttatgacttcgtgactggattactgtaatgctctatttgctggctgcccagcatcctctattaacaaacttcaattagtacaaaatgcagcagccagagttctgaccaggtctagaaaatatgatcatatcaccccaattttatcctccttacactggctgcctgttaagtttcgtattgaatttaaaatattacttctcacctataaagctctaaataatctagctcctgtttatctaaccaaccttctgtctcgctacgaaccaactcgctctttaagatctcaaaattcagggcttctggtagtacctagaatagcaaaatcaagtaaaggaggtcgagccttctctttcatggctcctacactctggaatagccttcctgataacgtccgaggctcagacacactctcccagttcaaaactagattaaagacctatctgtttagtaaagcatacactcaatgcatcacctagcgggttccacactggcttctgcatcttgcttaaatacactatgaacagcagctacgctaattattctctttattctctattttcacctggggatactcatcccgaggtcctcagattaggcggagtcactgattggatccaagaccagcgacgtgatgatcccaaggattccatatccgggaccaggccatatcctgagctgctgctgcgctgatggtcgtggggagtggagaacatgtgtctgattccagcgacgctccaggaacagacgagtcttcattgaggccatcttccagcataaaccacggcgaatgaagttctgcacaagacttttgtccagcggagaaattaaaatggtcgtgcccaactgagtctggttctctcaaggttttttttcttcactcccatcaggtgaagttttttttccctctccgctgtcgccactgcctcgcatggttcaggattggtagagctacgcatcgatgaatttgctcttcagtgttgaactctcagtaatgattaaatcacactgaactgagctaaactgaactgaactgaacttatacactaaaacctgaaccacactgttccagttactgaaccacactgttccagttactatgaccatttatgtgaagctgctttgacacaatctacattgtaaaagcgctatacaaataaagctgaattgaattgaattggcaGAAATACACGGTATGTGTGAAAATTATCGACTTTTATTTGTGccaaaaaatcattcaaataggGCGACGCGGTGGTGCTGTGGGTAGCATGTTCTCCTCACAgatagaaggtcgctggtttgaacctcggctgggtcagttggtgtttctgtgtggagtttgcatgttctccccatgttggcatgggttcccccacagtccaaactattttctacaatgtagattgtgtcaaagcagcttaacatagaagttgtagtaaattgaaactgtgtcagtccagttttcagagttgaaaacAAACGTGAAAAAGCTTCATTACtggcataaaaaataaatgattcttAAGATTAGGagtgtattgttcattgtgtTGTCATCCACATTAGGAGGAAGAGGAGTGAAGCGGAAAGCAGATGATGCTTTTCAGAGTGTTTCTGGTGGAGGTAAACCATCTGCCCACCGGAAACGCATCAGAGTTGCTGAGCTGGAGAACACAAGTGTAGACGCCGACACAGAGGCGTCCAGCTCAGGTCAGTCCACTCTTAAATGACTGGAAAACTGGAGCACTGCTGCCATTTGTTAAATCCCAGAGTAAAATAAATGGCAATATTGAAATAATcgattattaataattcattattgaCTGTAATCCACATCAGGAGGAAGAGGAGTGAAGAGGAAAGCGGATGATGATTTGCAGAGTGATTCTGATGGAGTCAAACCATACGCTCTGCGGAAACGCATCAAAGCTGCAGAGACGTCCAGCGATGAGAACAGCCGCTCAGGTCAGTCTCCCGTTACTCTTCTACAGTTGTATGAGCATATATATGTCAGCTTAA
>TCONS_00021734
atgattcttAAGATTAGGagtgtattgttcattgtgtTGTCATCCACATTAGGAGGAAGAGGAGTGAAGCGGAAAGCAGATGATGCTTTTCAGAGTGTTTCTGGTGGAGGTAAACCATCTGCCCACCGGAAACGCATCAGAGTTGCTGAGCTGGAGAACACAAGTGTAGACGCCGACACAGAGGCGTCCAGCTCAGGAGGAAGAGGAGTGAAGAGGAAAGCGGATGATGATTTGCAGAGTGATTCTGATGGAGTCAAACCATACGCTCTGCGGAAACGCATCAAAGCTGCAGAGACGTCCAGCGATGAGAACAGCCGCTCAGAAGCTCCAAGAGCACTGAAGAGGAAGGCTGGATGTCTGGATCAGGACACAGTTGCTGCAAAACGAGTGAAAACAGCCCAGATCCAACATGGCGGCAGCAGCAAAACTGCAGCAGAAGACAGAAGCTCAGCTAAAGACAGCAGTTCAGCTAAAGACAGCAGCTCAGCTAAAGACAGCAGCTCAGGTTTGTCTTCTGCCGTAATGTTTTCTGTCTAATCTGcagggttttgttttatttttcagagttTTACAGAATTTTCTCACGATTAGATTGAGCAGAAGAGTAACAGGAGTGAGCGAATGTCATAAATGTTTTCTCCAGGATCTTTACTTGACAGATATGTGCTTGGGAAGAAGCTGGGAGAGGGATACCATGGCACTGTCTATCTGGCTACACGGAAATCTGACGGCCAGAAGGTAACATTCAAttttcctttgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgtgtgtgtgtttgtgtgtgtttgtgtgtgtgtgtgcgtgcgtgcatgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgatcagacaTCTCTCTGGTTGAATAAGTTTTGACTTTATGCTCTCTTTGCAGGTTGCCAAAAAATTGTGACTAAAAAGCTTCTGGGAACGCGGTACCCGATGGTAAGTTTGCATACTCTACTGAAAATATCTGAAGAGAAGTGATGAACTCCATGTTTAGTCATGCTTTCACTAAGCTTGCGTTTCTGCTCATGCAAGTAAACAACTTGTTGTGTTTGTTGCGATGGGCATTGTAGCTGTCCACTCAGGAAATACaaagctaatgttgttttcaagtcatacttgtaTGTGATtttgaccgaatattcaaagtaacgtatcatggtaaacaacatagggagcgagtcacaagttggCAATGAACGAATTTGCGGCTATaacaccaactttacctcaatggaaTAGAAATATGGGATGAAAATAAAGAAAGATGCAGATGAAAACGTACGTTTGCGCACAGAGGAGCAGTTGTAggttgttgtgttgttgttgattctgATTCAGAAAAACTGAACGCGACGCACATCAGCAGGAAGGTCAACCAAAACACAAGAAACTGCCCCATAATGTGAAGAATTGTACGTTTAAAACAGCAGAACACTGTTGACTTTATGTCTGGACCCTAAACTCTCCCTTCAACAGATTAAATACTCCCAAAAAATACTGCAAAACTCCGTTTAAAGAAACTAAAGCCGTCAGATGATCGACGCTGACTAAACACGGAAACACAGCAGCGCTGCACCTTCACAATAAAAGTCCCGCGCGCAcgacacttaaagggatagttcctaGCAAGAGAAAACTTTTGTCaccatttatttattgaacatttatacatttattacctctgttaaacaaaaatatgtattCTGAATAATGCTAGAAATCAgcaggaaaaaatactatggaggtcattGTCTAGCAGTCTGTCTAGCAATGTTTAGCCTaaatgtgtttaacagaaaaaagaaactcaaacatgttttgaAGCAAGTGAAGAttgagtaaatgacgacagaattatCATATCTGGGTGAATATTTCGTTTAAAGTCTGCATTAAATCAAAATGTTCAATGTTTATGTTGCTAGCATATGGCTAGtcttaaaataaacaagttaatctGTGCAAATGAATCCACTGAAAAGTTTGTTTTGTggatctttaatcaaaatctgccCATCGGCTTCTTTTCTGAAACGGCGATTCTTTTCTGACGACTCTGACTGGCCAGGTTATGTCCGAGTCCAATCAAAACTGGACTCGAGTCCTAGTTCGATTACCCCAACAcaaccaaaacccctctaaaaccagcctggttgactagctaaaactagccaaccagcctaggctggtttaagcagttttttttcagtagcagtctttgttttcatgaatgaattatttttgttCCAGTTTGTGATGTTTTATTCGATTTAAAACCAATTAAATTATTTGCTCCTGTTATAGTTTGAGCCAAAAATATGTCAGATGGGCATAAATATAC

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021732 False 1287 lncRNA 0.41 3 36238471 36296065
TCONS_00021733 False 3476 lncRNA 0.42 4 36239581 36337111
TCONS_00021734 True 2455 lncRNA 0.42 3 36270438 36339909

Neighbor

gene id symbol gene type direction distance location
XLOC_010103 NA coding upstream 20467 36211780 ~ 36218004 (+)
XLOC_010102 sh3bp5b coding upstream 74963 36126310 ~ 36163508 (+)
XLOC_010101 NA coding upstream 200077 36033418 ~ 36038394 (+)
XLOC_010100 sh3d21 coding upstream 300314 35905031 ~ 35938157 (+)
XLOC_010099 thrap3a coding upstream 336764 35870456 ~ 35901707 (+)
XLOC_010106 NA coding downstream 6074 36345983 ~ 36348575 (+)
XLOC_010107 NA coding downstream 208118 36548027 ~ 36557880 (+)
XLOC_010108 NA coding downstream 220783 36560692 ~ 36591341 (+)
XLOC_010109 NA coding downstream 239091 36579000 ~ 36613851 (+)
XLOC_010110 NA coding downstream 266133 36606042 ~ 36608974 (+)
XLOC_010098 NA non-coding upstream 421410 35815389 ~ 35817061 (+)
XLOC_010097 NA non-coding upstream 457632 35777675 ~ 35780839 (+)
XLOC_010096 AL773558.2 non-coding upstream 512339 35726018 ~ 35726132 (+)

Expression


Co-expression Network