Gene
RNA
| Item | Value |
|---|---|
| gene id | G246857 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000057 |
| NCBI id | null |
| chromosome length | 6014843 |
| location | 5297832 ~ 5298088 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU280168 | True | 257 | lncRNA | 0.41 | 1 | 5297832 | 5298088 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000057_05163258_05169859 | NA | coding | downstream | 127713 | 5162640 ~ 5170119 (-) |
| CI01000057_04927533_04931127 | CDK4 | coding | downstream | 366705 | 4927533 ~ 4931420 (-) |
| CI01000057_04916382_04926437 | ARFGAP1 | coding | downstream | 371395 | 4916287 ~ 4926437 (-) |
| CI01000057_04891502_04906844 | ELMO2 | coding | downstream | 390988 | 4890235 ~ 4906844 (-) |
| CI01000057_04866089_04878847 | ITGA7 | coding | downstream | 418985 | 4866089 ~ 4878847 (-) |
| CI01000057_05442832_05459768 | VGLL4 | coding | upstream | 144696 | 5442784 ~ 5459768 (-) |
| CI01000057_05464070_05466835 | NA | coding | upstream | 165952 | 5464040 ~ 5469344 (-) |
| CI01000057_05486207_05495209 | TAMM41 | coding | upstream | 187952 | 5486040 ~ 5495657 (-) |
| CI01000057_05553430_05562372 | NA | coding | upstream | 253470 | 5551558 ~ 5562448 (-) |
| CI01000057_05633248_05635383 | MKRN2OS.2 | coding | upstream | 335127 | 5633215 ~ 5635898 (-) |
| G246780 | NA | non-coding | downstream | 14215 | 5086312 ~ 5283617 (-) |
| G246847 | NA | non-coding | downstream | 26479 | 5261892 ~ 5271353 (-) |
| G246793 | NA | non-coding | downstream | 204569 | 5063388 ~ 5093263 (-) |
| G246782 | NA | non-coding | downstream | 214430 | 5081269 ~ 5083402 (-) |
| G246764 | NA | non-coding | downstream | 327870 | 4969033 ~ 4969962 (-) |
| G246946 | NA | non-coding | upstream | 266434 | 5564522 ~ 5567290 (-) |
| G246950 | NA | non-coding | upstream | 270250 | 5568338 ~ 5888474 (-) |
| G246981 | NA | non-coding | upstream | 421703 | 5719791 ~ 5720606 (-) |
| CI01000057_05827116_05827514 | NA | non-coding | upstream | 519831 | 5827093 ~ 5827837 (-) |
| G247041 | NA | non-coding | upstream | 564697 | 5862785 ~ 5886376 (-) |
| CI01000057_03887278_03892054 | ABHD8B, ABHD8 | other | downstream | 1400141 | 3887203 ~ 3892054 (-) |
| CI01000057_01904867_01921400 | NA | other | downstream | 3376411 | 1904533 ~ 1921905 (-) |
| CI01000057_01801708_01806454 | LHFPL5, LHFPL5A | other | downstream | 3492679 | 1801528 ~ 1806454 (-) |
| CI01000057_05925181_05926068 | NA | other | upstream | 625452 | 5923540 ~ 5927295 (-) |
