XLOC_010105


Basic Information

Item Value
gene id XLOC_010105
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36282260 ~ 36357102 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021735
CGAAATAGTTTCACCACGGACACGAAGAGTACGAATCAAACAGCGACAGTCCACTGTCAAAATACATCACCGCGgtcacaggcattaataaacGAGCCAGAGTCATCGATCACAACAGTGCGCTTGCGTGATGAGATCCTGAATCCTGACTGAAGGAAACCCGCCGAACAAAATGTCTGGGCAGCTCCCACACACCGTCTCAGGTTCCATTTGGAGAAATAATATCTGCTGCTCAAAGCCTGGTGTCGAGGCTCACCAACACCCTAAGATCACCAGAGAACACAAACCAACTAAGAGAGATTAGttcaacacagagagagagaggacaacATCACGTTTCCAGAGCCAGTCAGTTCAGCAAGAAATGAGGTGTGAGATTCAGTGGATGACTGTATGTGTAGAAGAATctaatgtgtttttttctctaaTACAAATTGTTCCTACACTAATGAGAAAATATTTGTAGGTCATTTCCTGGGTTTTTCCGAGAGGAGCGTAGAGGGAAAAGCTGTTTTGCACCATATAAGGGGCAATGTAAAAgcttattaatgtatttttacctGCTGGACAAACAGCATGAAAAAACACCAAAAGGAGAGGCAGAAGTACATCTCACTATGGCTGGACTTGGAAGACAGCAGTTAAATGTGCAAGAAAATTTCCCCCATTCAGAGGTATGATTAAAGTTCCATGCCctgttattttgtatttctgtatttgttccaaaattataatgtattaattagggatgctcatttcggttaattttgctaaccgacaaccgtcgctcattaatcggttattaacggt
>TCONS_00021736
CGAAATAGTTTCACCACGGACACGAAGAGTACGAATCAAACAGCGACAGTCCACTGTCAAAATACATCACCGCGgtcacaggcattaataaacGAGCCAGAGTCATCGATCACAACAGTGCGCTTGCGTGATGAGATCCTGAATCCTGACTGAAGGAAACCCGCCGAACAAAATGTCTGGGCAGCTCCCACACACCGTCTCAGGTTCCATTTGGAGAAATAATATCTGCTGCTCAAAGCCTGGTGTCGAGGCTCACCAACACCCTAAGATCACCAGAGAACACAAACCAACTAAGAGAGATTAGTTCAACACAGAGAGAGAGGACAACATCAAGTTTCCAGAGCCAGTCAGTTCAGCAAGAAATGAGGTGTGAGATTCAGTGGATGACTGTATGTGTAGAAGAATctaatgtgtttttttctctaaTACAAATTGTTCCTACACTAATGAGAAAATATTTGTAGGTCATTTCCTGGGTTTTTCCGAGAGGAGCGTAGAGGGAAAAGCTGTTTTGCACCATATAAGGGGCAATGTAAAAgcttattaatgtatttttacctGCTGGACAAACAGCATGAAAAAACACCAAAAGGAGAGGCAGAAGTACATCTCACTATGGCTGGACTTGGAAGACAGCAGTTAAATGTGCAAGAAAATTTCCCCCATTCAGAGGTATGATTAAAGTTCCATGCCctgttattttgtatttctgtatttgttccaaaattataatgtattaattagggatgctcatttcggttaattttgctaaccgacaaccgtcgctcattaatcggttattaacggttaactggtcagattacaattaattttatattaaacaaattgacgtgtctattttgtgtctgacacattaaataatgcattttaaaatactaatttatttttatatgctagcacagtggttctcaaactgtggtacgtgtaccactagtggtacgcaggcttccttctagtggtacgcggatgaatcaaatatgtaatatgtacatgctacatatatttaaagaaattatcaaaaatgatttatatacgaatatgatgacataaagcctatatttatgaggtctaggcaacatttccaggtgctaACAAACCAGgagttatttcttttttaaactgtacagagcttaaGCTGCTTTACTAGACctaatacgctactgtatttcaaaactgctcattatggtggtacttgcaaagacaatttttttccgaggtggtacttgatgaaaaatgtttgagaaccactgtgctagcatattaataatagaacaaaacaacagagcatctttacGCActtgcagtgtttagcacagaagaacagaataagagaagaactaaataaaatgaataaaataaataggactgccctaaattattttcacttcaataattaatttatattacaaaacgaaaatactgactgattctttttaataaccggcataggctgtttttttttcgccaatcatgttttttttttcttctgtcaaataaaatcGCAGACTTTCTCAAATCGCcagctccacggaaaatatgcatttatttaatgccccgctgtcattattataatcacaaaacctttttacattttaatagaaatcattattttaaagaatatgtcctgatatggtttcctctctctctctctggcggttcaagtgcgcgcgctgcgtgatgaaaagacaacaacacgcgcgcataggttgactttttgtaaacag

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0006310 DNA recombination biological_process
GO:1902850 microtubule cytoskeleton organization involved in mitosis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0016569 covalent chromatin modification biological_process
GO:0016570 histone modification biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006281 DNA repair biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000280 nuclear division biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000779 condensed chromosome, centromeric region cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0070765 gamma-secretase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0098687 chromosomal region cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:1902494 catalytic complex cellular_component
GO:0005694 chromosome cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0003714 transcription corepressor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021735 False 810 lncRNA 0.42 2 36282260 36285155
TCONS_00021736 True 1745 lncRNA 0.37 2 36282260 36357102

Neighbor

gene id symbol gene type direction distance location
XLOC_010103 NA coding upstream 64256 36211780 ~ 36218004 (+)
XLOC_010102 sh3bp5b coding upstream 118752 36126310 ~ 36163508 (+)
XLOC_010101 NA coding upstream 243866 36033418 ~ 36038394 (+)
XLOC_010100 sh3d21 coding upstream 344103 35905031 ~ 35938157 (+)
XLOC_010099 thrap3a coding upstream 380553 35870456 ~ 35901707 (+)
XLOC_010107 NA coding downstream 190925 36548027 ~ 36557880 (+)
XLOC_010108 NA coding downstream 203590 36560692 ~ 36591341 (+)
XLOC_010109 NA coding downstream 221898 36579000 ~ 36613851 (+)
XLOC_010110 NA coding downstream 248940 36606042 ~ 36608974 (+)
XLOC_010111 col6a4a coding downstream 293882 36650984 ~ 36719705 (+)
XLOC_010098 NA non-coding upstream 465199 35815389 ~ 35817061 (+)
XLOC_010097 NA non-coding upstream 501421 35777675 ~ 35780839 (+)
XLOC_010096 AL773558.2 non-coding upstream 556128 35726018 ~ 35726132 (+)
XLOC_010114 NA non-coding downstream 597986 36955088 ~ 36958828 (+)

Expression


Co-expression Network