XLOC_010106


Basic Information

Item Value
gene id XLOC_010106
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36345983 ~ 36348575 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021737
CAAAAATTATGTCATGACTGTTGAAGTATTGGCAATTAGAAATAGCATTGTCTATTTTTTCTCCTTAATCCttatttgtatattataattTTGTGATGCAGATGGCTCCTGAACCAGCTTCTTGATAAGCATGCAGTTACATCTGATGAGAAGGCCAGGATAATATGTCTGCAACAGCAAATAGCAAAATCTGCGAGGATAGGAAGTGATGTCAACAAAAAACGAAAGACACGCATCTGTATGCTTTTTTCCGAGTTCGACAAGCTCACAACCATTATTGATTTGTATCGAGGTGTACTTCCAACTTTCCAGGTGTTCCTGAAGAAGTTGCAACATGAAAAGCCCATGATTCATGTGCTGCATGCTGAAATGCTACTGCTGGTTAGGGAACTTCTCTCCAAATTTATGAAGCCTGAAACTATCCCTTTGAGTGCAAATGGCTTGTTGAAGCTTAATGTTCACCAGAGAGACCTGCAGTACACTGACAAAAGGTTGTCTGTGGGAAGATTCAGCTTCTTTGCCTTAAACAAGGCTAGAGTGGAAAAGAAGCCCTGGGTGCAGAAGCTCTACAGTTCTCTCAGAGAAGGCTACATAAAGGCAGCAACATTCCTCCTGAAAAACCTGCCCCTCAACAACATCATCATCACCTCTTTATCTGCGTTGACACCATCATTGATTCTCCACGAATCAGTCCAAGGTGCATTCAACACCTTGGCCAAGGCCTTGCCAAATGCTGTGAAGTCAGAAGAGTTGGGTCAACTGGATGAAGAGGTTCGAGCCTACCAGATTAATACAGATCTAGGAGCACAGGCCAAATGCTTTGAGGAGAACAATGCACGAATCGATGTTGACTGGTGGAGTAAGATTTTTGCCATGAAGATGACAGGAGGAGGAACGAGGTTCCCCATCTTAGGGAAGTTGGTAAAGGCTCTTCTGTCATTGTTCACTGGCCCTCTTGTAGAAGGATCATTTAACATGATGGATGATATAATTGAGAAAGACAGGGTTAGGCTGAACATTGAGACTTATGAAGGTTTAGCCATTCTCAAGTCCAACATGAAGGTAATGGGCAAAACTGCATCTAAAATGCAAATTACCCCTGCATTAAGGAGATTTTGCCTGTCTTCTTATGAGACATACCAAAATCATCTGAAGAAAAAGAAGGTGAACCTTGACAATCAAAAGGAAAGGAAACTGAGGGAAGCTGTGAAGGTTCTCTCAGAAGTTAGGGTTAGAAAAGTAAAGAAAGGTTCCACCTCTTATGTTTGTGCTAAAGCCCCCACCTCTTCCACCCTGGGAGTTAAACGAATAGCTGCTGCTACAGCCTCCACCTCCTCCACTGCTGGAGTTAAAGGTAAATCTGCTGCTACAGCCTCCACCTCCTCCACTGCTGAAGTTAAAGGTAAATCTGCTGCTACAGCCTCCACCTCCTCCACTGCTGGAGTTAAAGGTAAATCTGCTGCTACAGCCTCCACCTCCTCCACTGCTGGAGTTAAAGGTAAATCTGCTGCTACAGCCTCCACCTCCTCCACTGCTGGAGTTAAAGGTAAATCTGCTGCTACAGCCTCCACCTCCTCCACTGCTGGAGTTAAAGGTAAATCTGCTGCTACAGCCTCCACCTCCTCCACTGCTGGAGTTAAAGGTAAATCTGCTGCTACAGCCTCCACCTCCTCCACTGCTGGAGTTAAAGGTAAATCTGCTGCTACAGCCTCCACCTCCTCCACCTCTCCTGGAGCCACTCCTGCACATGTAGCTAGTCAAACACTAAAACGGGTTTCAGGTGTAGCCAAGCTTCAGGAATATGGTTTTACAGCCAAAAAGCAGAAAAAGTGAAAAGCACTCTAGAGGCATTTGGACAAGAAAAGCACTTTTTGGAATTTAGTGGTGGTgctgttactttttttttgctgttaattattaatagtttCACAAAACATTGTTTGGTGTTATAAGATACATAAAACATGCACTGAAAATACACTTTTTGAAAAAGCACTTTTTGGAATTTAATGGTGATGctattactttttttctgttcattattAGGAGTTTCACAAAACATTGTTTGGTGTTATAAGATACATAAAACATGCACTGAAAATACACTTTTTGAAAAAGCACTTTTTGGAATTTAATGGTGATGctattac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021737 True 2150 lncRNA 0.42 2 36345983 36348575

Neighbor

gene id symbol gene type direction distance location
XLOC_010104 NA coding upstream 6074 36238471 ~ 36339909 (+)
XLOC_010103 NA coding upstream 127979 36211780 ~ 36218004 (+)
XLOC_010102 sh3bp5b coding upstream 182475 36126310 ~ 36163508 (+)
XLOC_010101 NA coding upstream 307589 36033418 ~ 36038394 (+)
XLOC_010100 sh3d21 coding upstream 407826 35905031 ~ 35938157 (+)
XLOC_010107 NA coding downstream 199452 36548027 ~ 36557880 (+)
XLOC_010108 NA coding downstream 212117 36560692 ~ 36591341 (+)
XLOC_010109 NA coding downstream 230425 36579000 ~ 36613851 (+)
XLOC_010110 NA coding downstream 257467 36606042 ~ 36608974 (+)
XLOC_010111 col6a4a coding downstream 302409 36650984 ~ 36719705 (+)
XLOC_010098 NA non-coding upstream 528922 35815389 ~ 35817061 (+)
XLOC_010097 NA non-coding upstream 565144 35777675 ~ 35780839 (+)
XLOC_010114 NA non-coding downstream 606513 36955088 ~ 36958828 (+)

Expression


Co-expression Network