G247062


Basic Information

Item Value
gene id G247062
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5900651 ~ 5901238 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU280412
AACAAATCAATGTTTAATTTACAGTCAAAAACTGTAAACTGATATTCCCACAATTCCCTTTGTGACACTCCACATTTGAAAGTATTTTGTTTAAAAAATCATGTTTCTTAATAGTTTTTGTTATCAGTTATGTACATTAGGGTTTTATGTTACATCTTCTGTTGTTTAATGAATGTTTATTGCATTATTTAAGTGTTGTGTGTTACCATGATGGTGTTTTGCATTTGCGTGAATGACTCTTTGCACCTTCTTTGTATTAGTATATACTTAAGCTCCTGGAAAAGCTATTTGTGATGAACTCTGATTCTTCATGTGGCTTTCTCTTTTACCGCCTGCATTATTATGGTGGTTGTCAGTGTATGTTAAAGGTACAAAACA
>TU280413
CAGGGTTTCACCTCAAGGCTGCACTGTAAAAAATGAATGTGATTTTAACAGTAAAATATTGTAAAAACGCTACAGAAAAAAATTGTAAATAGGTTAACAGTAAGTTCCCGTACTATATACAGGGAAAAACTGTAAAAGCTCTTACCAAACATTTTATGTAATTTTCACAGTAAAATGCTGTAAATTTTACAATTTTTAGAAGTAAAAAAGAACAAATCAATGTTTAATTTACAGTCAAAAACTGTAAACTGATATTCCCACAATTCCCTTTGTGACACTCCACATTTGAAAGTATTTTGTTTAAAAAATCATGTTTCTTAATAGTTTTTGTTATCAGTTATGTACATTAGGGTTTTATGTTACATCTTCTGTTGTTTAATGAATGTTTATTGCATTATTTAAGTGTTGTGTGTTACCATGATGGTGTTTTGCATTTGCGTGAATGACTCTTTGCACCTTCTTTGTATTAGTATATACTTAAGCTCCTGGAAAAGCTATTTGTGATGAACTCTGATTCTTCATGTGGCTTTCTCTTTTACCGCCTGCATTATTATGGTGGTTGTCAGTGTATGTTAAAGGTACAAAACA
>TU280411
AACAAATCAATGTTTAATTTACAGTCAAAAACTGTAAACTGATATTCCCACAATTCCCTTTGTGACACTCCACATTTGAAAGTATTTTGTTTAAAAAATCATGTTTCTTAATAGTTTTTGTTATCAGTTATGTACATTAGGGTTTTATGTTACATCTTCTGTTGTTTAATGAATGTTTATTGCATTATTTAAGTGTTGTGTGTTACCATGATGGTGTTTTGCATTTGCGTGAATGACTCTTTGCACCTTCTTTGTATTAGTATATACTTAAGCTCCTGGAAAAGCTATTTGTGATGAACTCTGATTCTTCATGTGGCTTTCTCTTTTACCGCCTGCATTATTATGGTGGTTGTCAGTGTATGTTAAAGGTAC
>TU280414
CAGGGTTTCACCTCAAGGCTGCACTGTAAAAAATGAATGTGATTTTAACAGTAAAATATTGTAAAAACGCTACAGAAAAAAATTGTAAATAGGTTAACAGTAAGTTCCCGTACTATATACAGGGAAAAACTGTAAAAGCTCTTACCAAACATTTTATGTAATTTTCACAGTAAAATGCTGTAAATTTTACAATTTTTAGAAGTAAAAAAGAACAAATCAATGTTTAATTTACAGTCAAAAACTGTAAACTGATATTCCCACAATTCCCTTTGTGACACTCCACATTTGAAAGTATTTTGTTTAAAAAATCATGTTTCTTAATAGTTTTTGTTATCAGTTATGTACATTAGGGTTTTATGTTACATCTTCTGTTGTTTAATGAATGTTTATTGCATTATTTAAGTGTTGTGTGTTACCATGATGGTGTTTTGCATTTGCGTGAATGACTCTTTGCACCTTCTTTGTATTAGTATATACTTAAGCTCCTGGAAAAGCTATTTGTGATGAACTCTGATTCTTCATGTGGCTTTCTCTTTTACCGCCTGCATTATTATGGTGGTTGTCAGTGTATGTTAAAGGTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU280412 False 378 lncRNA 0.31 1 5900651 5901028
TU280413 False 588 lncRNA 0.30 1 5900651 5901238
TU280411 False 372 lncRNA 0.32 1 5900657 5901028
TU280414 True 582 lncRNA 0.31 1 5900657 5901238

Neighbor

gene id symbol gene type direction distance location
CI01000057_05857113_05861024 ACOT8 coding downstream 38172 5856980 ~ 5862479 (-)
CI01000057_05849700_05856513 SRSF6 coding downstream 44138 5849106 ~ 5856513 (-)
CI01000057_05842522_05847302 IFT52 coding downstream 53349 5842319 ~ 5847302 (-)
CI01000057_05830634_05838724 MYBL2, MYBL2B coding downstream 61604 5830058 ~ 5839047 (-)
CI01000057_05827116_05827514 NA coding downstream 73137 5827093 ~ 5827837 (-)
CI01000057_05925181_05926068 NA coding upstream 23833 5923540 ~ 5927295 (-)
CI01000057_05955545_05960873 EDN3 coding upstream 54300 5955538 ~ 5961098 (-)
CI01000057_05989326_06003691 NA coding upstream 87531 5988769 ~ 6004299 (-)
G247061 NA non-coding downstream 1718 5898342 ~ 5898933 (-)
G247060 NA non-coding downstream 5303 5895134 ~ 5895348 (-)
G247059 NA non-coding downstream 6081 5894265 ~ 5894570 (-)
G247058 NA non-coding downstream 10585 5887460 ~ 5890066 (-)
G247041 NA non-coding downstream 14275 5862785 ~ 5886376 (-)
G247063 NA non-coding upstream 1079 5902317 ~ 5902549 (-)
G247064 NA non-coding upstream 2205 5903443 ~ 5903710 (-)
G247065 NA non-coding upstream 2698 5903936 ~ 5904156 (-)
G247067 NA non-coding upstream 4618 5905856 ~ 5906161 (-)
G247068 NA non-coding upstream 5843 5907081 ~ 5907323 (-)
G246780 NA other downstream 617034 5086312 ~ 5283617 (-)
CI01000057_04927533_04931127 CDK4 other downstream 969231 4927533 ~ 4931420 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 2002960 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 3979230 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 4095498 1801528 ~ 1806454 (-)

Expression


Co-expression Network