XLOC_010109


Basic Information

Item Value
gene id XLOC_010109
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36579000 ~ 36613851 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021990
TCTAAACTGGACTAGGGTGAATAGACTTACCTGTTTGCCGTCCACTTTTCTGATACCACGATAGACATTGCCGTAGCAGCCAGCTCCAATATTTTCTTTCAGGTCATATTTTACTTCCACTGAAAGATAAAAACAGCATGTTCATTTGAGACAGCTTCTAGTTATGCCTGAACAGACAGTATAAACATAAAGCAATTTAACCCGTAACAGCCAACAACATAAACAAAGCCAATTTGCCCCGAATTAAgttttttgaaacttttttttaattcaaaagccttttcccaaaatatgtcaaaatagttTGTCACTAAAAAAATCACTCCATTTGCTGAAACTGAGAGAAAGTTGAGGCCAAATGACCCCAGTGTGTATGAAACAGCAACACAAGGGTTAAACAACATcaatcaaacattaaaaatacattcaaatctaCCAGAACCAGGAGAAGGCCCTATCCTCTGTCTACATGGCGGCCTTCTTTGTCCGGAAGGACCGGGAACATGAAACatacttttttccatttattagCAGTAAATAACGCTCTCTAGGGTGTATAAATGAGTTTACTGCAGTTAATTATCTGAGTTTTCGCCTTGTCTGAGTATCAAATGAAGAGTTCCTCAATACACGTCTGTTCTGTCAGGCGTCTGGTGGATTCTGACACTCGCGGTGCAGAACGCGTTCGATTTATGACGTAGCGTAGGGCCAGACCAAAGATGGGATGGGGGTCATGTAGGTACAGGTGTTCGCGTTTATTCTTCAGGGTGTAAAAGGTGAAGTGGCATATTAACCTACTGTTTAGGGCTCGTGATAACATTATAAAATACGCGTGGACCTTATACAACTCTTTTGCCATCTCTGCATGGGGAAAAGAGGGAAGAATAAAGTTAATCACGCAAGGCCTGGCATGATTGATATTTGACTGGTCCAACACGGCTGATTAATTTGAGGACTCTGTATCGGCCTTTAGCTCTGCACTGAATTTACAATGTAATACGGAATCACGATGCTTTGACTCTTGTCCAGAAGTCTGCTGCTAAGAAATCGAAAGCTCCGGAGTCTAATGTTAGTTGTCATGGAAACGAGGATGTCTTGGCGGCAGTACGTGAAGTTGCTAACCTATGGAATAAAATTTctgttataattataaaattcaCGCATCTGCAATTATGAAACCGCAAAGGAAAACGAAACATAACTTGTAACGTTACTTTACAGACACAAAATAGTTTCACCACGGACACGAAGAGTACGAATCAAACAGCGACAGTCCACTGTCAAAATACATCACCGCGGTCACAGGCATTAATTAACGAGCCAGAGTCATCGATCACACCAGTGCGCTTGCGTGATGAGATCCTGAATCCTGACTGAAGGAAGCCCGCCGAACAAAATGTCTGGGCAGCTCCCACACACCGTCTCAGGTTCCATTTGGTGAAATAATATCTGCTGCTCAAAGCCTGGTGTCGAGGCTCACCAACACCCTAAGATCACCAGAGAACACAAACCAACTAAGAGAGATTAGTTCAACACAGAGAGAGAGGACAACATCAAGTTTTCAGAGCCAGTCAGTTCAGCAAGAAATGAGGTCATTTCCTGGGTTTTTCCGAGAGGAGCGTAGAGGGAAAAGCTGTTTTGCACCATATAAGTGGAAATGTAAAAgcttattaatgtatttttacctGCTGGACAAACAGCATGAAAAAACACCAAAAGGAGAGGCAGAATTACATCTCACTATGGCTGGACTTGGAAGACAGCAGTTAAATGTGCAAGAAAATTTCCCCCATTCAGAGGTATGATTAAAGTTCCATGCCctgttattttgtatttctgtatttgttccaaaattataatgtattaattagggatgctcatttcggttaattttgctaaccgacaaccgtcgctcattaatcggttattaacggt
>TCONS_00021991
ACTGGACTAGGGTGAATAGACTTACCTGTTTGCCGTCCACTTTTCTGATACCACGATAGACATTGCCGTAGCAGCCAGCTCCAATATTTTCTTTCAGGTCATATTTTACTTCCACTGAAAGATAAAAACAGCATGTTCATTTGAGACAGCTTCTAGTTATGCCTGAACAGACAGTATAAACATAAAGCAATTTAACCCGTAACAGCCAACAACATAAACAAAGCCAATTTGCCCCGAATTAAgttttttgaaacttttttttaattcaaaagccttttcccaaaatatgtcaaaatagttTGTCACTAAAAAAATCACTCCATTTGCTGAAACTGAGAGAAAGTTGAGGCCAAATGACCCCAGTGTGTATGAAACAGCAACACAAGGGTTAAACAACATcaatcaaacattaaaaatacattcaaatctaCCAGAACCAGGAGAAGGCCCTATCCTCTGTCTACATGGCGGCCTTCTTTGTCCGGAAGGACCGGGAACATGAAACatacttttttccatttattagCAGTAAATAACGCTCTCTAGGGTGTATAAATGAGTTTACTGCAGTTAATTATCTGAGTTTTCGCCTTGTCTGAGTATCAAATGAAGAGTTCCTCAATACACGTCTGTTCTGTCAGGCGTCTGGTGGATTCTGACACTCGCGGTGCAGAACGCGTTCGATTTATGACGTAGCGTAGGGCCAGACCAAAGATGGGATGGGGGTCATGTAGGTACAGGTGTTCGCGTTTATTCTTCAGGGTGTAAAAGGTGAAGTGGCATATTAACCTACTGTTTAGGGCTCGTGATAACATTATAAAATACGCGTGGACCTTATACAACTCTTTTGCCATCTCTGCATGGGGAAAAGAGGGAAGAATAAAGTTAATCACGCAAGGCCTGGCATGATTGATATTTGACTGGTCCAACACGGCTGATTAATTTGAGGACTCTGTATCGGCCTTTAGCTCTGCACTGAATTTACAATGTAATACGGAATCACGATGCTTTGACTCTTGTCCAGAAGTCTGCTGCTAAGAAATCGAAAGCTCCGGAGTCTAATGTTAGTTGTCATGGAAACGAGGATGTCTTGGCGGCAGTACGTGAAGTTGCTAACCTATGGAATAAAATTTctgttataattataaaattcaCGCATCTGCAATTATGAAACCGCAAAGGAAAACGAAACATAACTTGTAACGTTACTTTACAGACACAAAATAGTTTCACCACGGACACGAAGAGTACGAATCAAACAGCGACAGTCCACTGTCAAAATACATCACCGCGGTCACAGGCATTAATTAACGAGCCAGAGTCATCGATCACACCAGTGCGCTTGCGTGATGAGATCCTGAATCCTGACTGAAGGAAGCCCGCCGAACAAAATGTCTGGGCAGCTCCCACACACCGTCTCAGGTTCCATTTGGTGAAATAATATCTGCTGCTCAAAGCCTGGTGTCGAGGCTCACCAACACCCTAAGATCACCAGAGAACACAAACCAACTAAGAGAGATTAGTTCAACACAGAGAGAGAGGACAACATCAAGTTTTCAGAGCCAGTCAGTTCAGCAAGAAATGAGGTCATTTCCTGGGTTTTTCCGAGAGGAGCGTAGAGGGAAAAGCTGTTTTGCACCATATAAGTGGAAATGTAAAAgcttattaatgtatttttacctGCTGGACAAACAGCATGAAAAAACACCAAAAGGAGAGGCAGAAGTACATCTCACTATGGCTGGACTTGAAAGACAGCAGTTAAATGTGCAAGAAAATTTCCCCCATTCAGAGCTTTCAGATATACTTGTGAAATTGTTTCTAAAACTGGCCAACATCTGTGGTGGATGTTTGTTACGCAAGTCTTCAGGTatgttc
>TCONS_00020068
AGAACACAAACCAACTAAGAGAGATTAGTTCAACACAGAGAGAGAGGACAACATCAAGTTTTCAGAGCCAGTCAGTTCAGCAAGAAATGAGGTCATTTCCTGGGTTTTTCCGAGAGGAGCGTAGAGGGAAAAGCTGTTTTGCACCATATAAGTGGAAATGTAAAAgcttattaatgtatttttacctGCTGGACAAACAGCATGAAAAAACACCAAAAGGAGAGGCAGAAGTACATCTCACTATGGCTGGACTTGAAAGACAGCAGTTAAATGTGCAAGAAAATTTCCCCCATTCAGAGCTTTCAGATATACTTGTGAAATTGTTTCTAAAACTGGCCAACATCTGTGGTGGATGTTTGTTACGCAAGTCTTCAGGTatgttc
>TCONS_00021993
CGATCACAACAGTGCGCTTGCGTGATGAGATCCTGAATCCTGACTGAAGGAAGCCCGCGGAACAAAATGTCTGGGCAGCTCCCACACACCGTCTCAGGTTCCATTTGGTGAAATAATATCTGCTGCTCAAAGCCTGGTGTCGAGGCTCACCAACACCCTAAGATCACCAGAGAACACAAACCAACTAAGAGAGATTAGTTCAACACAGAGAGAGAGGACAACATCAAGTTTTCAGAGCCAGTCAGTTCAGCAAGAAATGAGGTCATTTCCTGGGTTTTTCCGAGAGGAGCGTAGAGGGAAAAGCTGTTTTGCACCATATAAGTGGAAATGTAAAAgcttattaatgtatttttacctGCTGGACAAACAGCATGAAAAAACACCAAAAGGAGAGGCAGAATTACATCTCACTATGGCTGGACTTGGAAGACAGCAGTTAAATGTGCAAGAAAATTTCCCCCATTCAGAGGTATGATTAAAGTTCCATGCCctgttattttgtatttctgtatttgttccaaaattataatgtattaattagggatgctcatttcggttaattttgctaaccgacaaccgtcgctcattaatcggttattaacggt

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000092299

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021990 False 1935 lncRNA 0.41 3 36579000 36613851
TCONS_00021991 False 1878 lncRNA 0.42 4 36579005 36584785
TCONS_00020068 False 383 processed_transcript 0.40 3 36582486 36584785
TCONS_00021993 True 605 lncRNA 0.42 3 36611244 36613851

Neighbor

gene id symbol gene type direction distance location
XLOC_010107 NA coding upstream 21120 36548027 ~ 36557880 (+)
XLOC_010105 NA coding upstream 221898 36282260 ~ 36357102 (+)
XLOC_010106 NA coding upstream 230425 36345983 ~ 36348575 (+)
XLOC_010104 NA coding upstream 239091 36238471 ~ 36339909 (+)
XLOC_010103 NA coding upstream 360996 36211780 ~ 36218004 (+)
XLOC_010111 col6a4a coding downstream 37133 36650984 ~ 36719705 (+)
XLOC_010112 decr1 coding downstream 134687 36748538 ~ 36760156 (+)
XLOC_010113 si:ch73-215d9.1 coding downstream 154823 36768674 ~ 36931828 (+)
XLOC_010114 NA coding downstream 341237 36955088 ~ 36958828 (+)
XLOC_010115 adgrb1a coding downstream 856866 37470717 ~ 37630250 (+)
XLOC_010116 NA non-coding downstream 1019596 37633447 ~ 37641863 (+)
XLOC_010117 NA non-coding downstream 1045669 37659520 ~ 37660611 (+)
XLOC_010118 NA non-coding downstream 1099413 37713264 ~ 37713637 (+)
XLOC_010119 BX294107.1 non-coding downstream 1157632 37771483 ~ 37771600 (+)

Expression


Co-expression Network