XLOC_001011 (si:ch211-14k19.8)


Basic Information

Item Value
gene id XLOC_001011
gene name si:ch211-14k19.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9100447 ~ 9115034 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001606
GTCATATCTCGCTGTGCGCCGGTTTAAAAGCATGCTAATGCAAGCCAAAGCGGAGCAAACACGCAGCAGTTATCGCAGATTTAATCACTTTGATGAGCTTTCGGCTCGTTTTTGGGGAAGGTCCTGGCCTGGCTCTGAGGACTCTCTGGATAACCCTGGCTTCACCCGCTCAGATGAACTGCTTCACCTGAGGGCTCTCGACCGCACCTGCTGTTACCATGACGACACTCTATCAGTGGTGTCCACATACCATGGTAGCGGAGCACACCTCAACACTGTATATCCTCATGGTTCTCAGTATGGCTGGGATCTCAGCAACTGCAGCCTGGCAGATGGTGTGGTGGATTCTGGGAAGGCTAGTGACTTATCAGTGTGTAGCTGGCCGATTGAGCCGATTCAGTGGACACCATTCCCTTTACTGCAGCAGCTGTCCAGAAATACCACCACGGTCAAAGCATCTCGTCCTCGCTCTTACTGTGAAGGCATGGAGCTGGTGGACTTGGAGAAGAGCTGGACTGCATAACGGGCACTCCAAATGTGAGAATATTACATCTTCTTAAGAAACATGATTGTTGTGcccaacaataataaaatgtcaatttaCTGAAA
>TCONS_00001607
CTAGTTTAAATATCGTCTACGTTATACTGAATTAGGctataatgtataacttttaacGTTTCTTTATGGAATCAACTGTGGCAACGGATTTCTTCCTGGAATGTTTTGGCTCCGAAAATGCGTCATTTTGTGTATCTTTTCCTATTTATTTTACCTCCAGGTAACACTCTTTTGAACTCGAGCCAAGACTGTGGAGGTAAAATTCTTGGAGAGCATAGTGGCTCAATCCGGTACTCTTTACACCCGAGCAGACTTTTATTTGACAGAATTACTAACGACAGCAAAGAAAAGCAGTTGGATATTACGTGTACTTGGATTATCGATGTACATGAAAATCAGACTGTGTGGATAGATGCTATTTCTGTTGGGAAGGGAGCTCGTATTGGGATTACATTTGGGAATGGAGATACAGTGATCTACGAAAAGGATGAGCAGGAGATATTTTCTGGCACTGGGAGAACTGTTGTTGAGTGGAGCTTAAAAAGGACCGACAAAACATTTGCCACATTACATCTGagATGGAACACGTCAGAGGAGAATCAGACTTCTGCTTTGATTCCTTACACCCACTCTGAAGCTGACCCGGTTTCTCCCTCTCCGAGTTCCTCAAACGGTGTAACCTACACCCCTGACATTCCAGTGAACAGCAATGAAACCCCCAAAACACACAGTGTAGGTGGAAAGAGTATACGGCAGGGCGGAGGTGTGTCTGACCTGGCCGATAAGCACAGACCCCTCTATCCACAGGAAACCACCAACAATGGACAGGAAACGGCTGGAGTCTGGATCTCTGACCTCGCGTTCACTGGCACACATTCTTATTCTGATACACACACCAACTCTGGCCTTGACGCAAACATGGACACGCTTGCAGTATTGTCTGACGAACCTCCTTTGGCTCAGTCGTCCACTAAAGACCAATCGCCATTGCTTTCTGCACAAACTACGCCCAGTTCGACAGCTCCCATTGCTGCAAAAACAAGCACTCTTTTAGACACAAATAATGTTGCGTTCACCGAATTGCACAGAGGAAGTTcacaacccacacacacacatgcatttactCAAATCCAGTTCAAAACAGTTAAAAGAGGTGATCTAAGTTCAATTTTTCCTACTTCCAGCTATATGGCGGTAAGTCCACCAAATATTGAGCCGTTCAATCAAACATCCACACAGGCAGATTACATTAGCGACAGTGCTACCAAGGATACACCTACTACCAGGACAGGGTTTAAAAGGGATGTGTTAACAATGTCTGAGAAGATTGGGACAAGTCAATTTCATGCAACTGTTTGGAGCTCAAACACAATCACAGATGACAGCCAATCTGTAGCTTCAGAGGCAGACAAGACAGATCATTCTCCAAGGTCAACAAATCCTAATCAAAGCATTGCTAATCAAACAATCAATGAGGATTTAGTTATGACTACTAGCACGCTTGCTACAGTATCAAGATTTCCAAGCCAAACCAATCCTTTAACGTTTTCTGACAGCGACATGACTGAATACTCCAGTTACTCCACATCTCCAAGTGAGCCACCCATAAATGTTACCACTGATATTGAACCAACAGCTTCAAGTAGCACTCTTGCAACTTCTGAAATGTTAACCACGCACATCGTCCAAAGTCACCATACAAGTGCTCAAGAAACCAGCTCTGCATCTGCTCCTGTCTTTGACCTGACATCTCACAACAATAACAAAATCAGTGCATTCATCACTTTCTCCACTACAGACCTGACCCCCACTGAGAGTCCAAGTACATCAGAGGTGGATGAAGGGTTTTCAACTCATGGAAGAGATTGCCTTGGTCTTGGATGCACCTCGTTTTTACCATCTACTGTACAAAGAGTAAAAGATACCCCCATAACCAGCCCTCCATCGATTTCTGCAAGTCCTCAGATTAGTCCAAACATGACTTCTGACCCCTCTTCTGAGGATAGCACTACAGTAAGACTTGAGAACCGCACTAATGTGGAGCAATCTGATGTTTCCCCATCACAGGTCCAGAATATCAACACAAAATCAAGTATGCATACTGATTTATACACATCTACACCTCAGTATCCATCTTCCAAAACCGCACAGAGCTACGGGGAGTTTTCTGATGTAACAGATATCAGTAAGATGACAAGTAGTCAAACGGAAAGTACAAGCCAATCAAGTACTAGTACGACGAGTTCAAAGACAACTCTTGGCTTATCTCGATTTAATACTGAATCATCAGAAAACACTAATGGTTTTACTTCATCTTATCACTTCACAACTCCCTCCGTCTTTCAGGTCAGTACAACTGATCATACCATTCAAACCAGTACCACTGATGGCATAACCACTCCACACTGGGAAACTAGTCAGACTTCAGTGGTTCACACATCTTCAGTAACCATCCCACAGGTGAATCCGCACACCACGACCACAGAAACGACTTCAGCCCGGGTTCATAAGCAGTCTCAGCCTGGAACTTTTAGACCTCTCCAACATACAACCACAAGCTCTTTTGTTATTCACACAAAAGCACGCAAAATACCTACGCAAACAGTTAGCCATTCTACTGCATCCAGCTTTGACAAGAAGTGGCCACATGGACGCCATTATTTCATAGTGGATGACCAGCCAGTGATCTTCAAGGaaaaaacaTTTCAAGTGCTCCTACAAATCGTCCTAGAAGGAGATTATGTGCCTAGTGTGAAACTTCTGGAGGTGGAGACATTTCTGCAGAAAGTTGCTGGGTTTCAGAATCAACATGTAACCTGGCACAGTGGTCCAGTTCTACAGACAGTGGTTCAGTTCCAAACAGTGCAAGCGCTCTCCTGGCTGGGAAGGGTGGAGTCTTTGTTACGGGAGGCGGGGTTAAACCCACTGCCAAAGAAAGGATTATTTGTGGGTGGAGTTAGAGTGAAGAATATTACAGAAGGAGgtTTGCAGACAGATGCTTGTGAATGGTTGCTTGAATGTCCGTCTGGGTTCCAGTGTGTCTCCTCCAAGGGAAATGCCACCTGTACATCTGTGTGCCACTCTGAATACTGTAAACATCAGGGCATCTGTGTTCACCGCCTCGGGCAGCAGCCTATCTGCCAGTGTCCCGTCGGGGAGGATTACTGGTTTATGGGCCAGCGATGTGACCTCCGCATGACCCGGCCGCGTCTGGTTGGCGTATGTTTTGGGGTACTAGTTGCTGTCGCAGCAGTCATGGCTCTTCTGTCATATCTCGCTGTGCGCCGGTTTAAAAGCATGCTAATGCAAGCCAAAGCGGAGCAAACACGCAGCAGTTATCGCAGATTTAATCACTTTGATGAGCTTTCGGCTCGTTTTTGGGGAAGGTCCTGGCCTGGCTCTGAGGACTCTCTGGATAACCCTGGCTTCACCCGCTCAGATGAACTGCTTCACCTGAGGGCTCTCGACCGCACCTGCTGTTACCATGACGACACTCTATCAGTGGTGTCCACATACCATGGTAGCGGAGCACACCTCAACACTGTATATCCTCATGGTTCTCAGTATGGCTGGGATCTCAGCAACTGCAGCCTGGCAGATGGTGTGGTGGATTCTGGGAAGGCTAGTGACTTATCAGTGTGTAGCTGGCCGATTGAGCCGATTCAGTGGACACCATTCCCTTTACTGCAGCAGCTGTCCAGAAATACCACCACGGTCAAAGCATCTCGTCCTCGCTCTTACTGTGAAGGCATGGAGCTGGTGGACTTGGAGAAGAGCTGGACTGCATAACGGGCACTCCAAATGTGAGAATATTACATCTTCTTAAGAAACATGATTGTTGTGcccaac
>TCONS_00001608
AACGACTTCAGCCCGGGTTCATAAGCAGTCTCAGCCTGGAACTTTTAGACCTCTCCAACATACAACCACAAGCTCTTTTGTTATTCACACAAAAGCACGCAAAATACCTACGCAAACAGTTAGCCATTCTACTGCATCCAGCTTTGACAAGAAGTGGCCACATGGACGCCATTATTTCATAGTGGATGACCAGCCAGTGATCTTCAAGGaaaaaacaTTTCAAGTGCTCCTACAAATCGTCCTAGAAGGAGATTATGTGCCTAGTGTGAAACTTCTGGAGGTGGAGACATTTCTGCAGAAAGTTGCTGGGTTTCAGAATCAACATGTAACCTGGCACAGTGGTCCAGTTCTACAGACAGTGGTTCAGTTCCAAACAGTGCAAGCGCTCTCCTGGCTGGGAAGGGTGGAGTCTTTGTTACGGGAGGCGGGGTTAAACCCACTGCCAAAGAAAGGATTATTTGTGGGTGGAGTTAGAGTGAAGAATATTACAGAAGGAGgtTTGCAGACAGATGCTTGTGAATGGTTGCTTGAATGTCCGTC
>TCONS_00001609
TTTCAGTGACGGACTGAGGGATGAACTTGAGTCCTCGATGGTCTTTTTAAAGAGAGATGCAAAAACTGCTACTAATCATCGTAATTTACAGTGTTTGACTAGTTTAAATATCGTCTACGTTATACTGAATTAGGctataatgtataacttttaacGTTTCTTTATGGAATCAACTGTGGCAACGGATTTCTTCCTGGAATGTTTTGGCTCCGAAAATGCGTCATTTTGTGTATCTTTTCCTATTTATTTTACCTCCAGGTAACACTCTTTTGAACTCGAGCCAAGACTGTGGAGGTAAAATTCTTGGAGAGCATAGTGGCTCAATCCGGTACTCTTTACACCCGAGCAGACTTTTATTTGACAGAATTACTAACGAC

Function

symbol description
si:ch211-14k19.8 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood; blood vasculature; brain; eye; and intermediate cell mass of mesoderm.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-051214-4 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood; blood vasculature; brain; eye; and intermediate cell mass of mesoderm.

Ensembl:

ensembl_id ENSDARG00000088975 ENSDARG00000093053 ENSDARG00000100949

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001606 False 609 mRNA 0.50 4 9100447 9104631
TCONS_00001607 False 3789 mRNA 0.46 11 9100473 9114936
TCONS_00001608 False 540 mRNA 0.46 5 9105039 9109699
TCONS_00001609 True 377 mRNA 0.38 2 9113630 9115034

Neighbor

gene id symbol gene type direction distance location
XLOC_001010 NA coding downstream 17675 9081842 ~ 9082772 (-)
XLOC_001009 NA coding downstream 119776 8978905 ~ 8980671 (-)
XLOC_001008 NA coding downstream 122484 8974500 ~ 8977963 (-)
XLOC_001007 socs1b coding downstream 134401 8962624 ~ 8966046 (-)
XLOC_001006 grin2ab coding downstream 171606 8763429 ~ 8928841 (-)
XLOC_001012 ndufab1a coding upstream 3066 9118100 ~ 9123465 (-)
XLOC_001013 palb2 coding upstream 9989 9125023 ~ 9130136 (-)
XLOC_001014 palb2 coding upstream 17301 9132335 ~ 9134045 (-)
XLOC_001015 NA coding upstream 23604 9138638 ~ 9139160 (-)
XLOC_001016 BX004779.2 coding upstream 42276 9157310 ~ 9162637 (-)
XLOC_001002 NA non-coding downstream 475181 8612575 ~ 8625266 (-)
XLOC_001001 NA non-coding downstream 513088 8579155 ~ 8587359 (-)
XLOC_001018 BX004779.1 non-coding upstream 82825 9197859 ~ 9197966 (-)
XLOC_001023 AL954703.1 non-coding upstream 193237 9308271 ~ 9321931 (-)
XLOC_001024 NA non-coding upstream 305790 9420824 ~ 9422275 (-)

Expression


Co-expression Network