CI01000058_00441219_00462553


Basic Information

Item Value
gene id CI01000058_00441219_00462553
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 441211 ~ 462719 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_00441219_00462553.mRNA
AGTTTGACCCAGTGATGCAAGAGCATTTGAGGAGAATTCAGGCAAAACAGCTAAGTGACACTTATTTAAGCAAGCATATTCAAAATGAACTGATTTCCCTTGTGGCGAAATGTACAACTGATGCAATTGTAGAGAGAGTAAAACAGCCAAATACTACGCTGTAATCATGGACTGCACTCCAGACCTCAGTCACAATGAGCAGCTCTCAGTGGTGTTACGAATTGTAAATTGTGAGTTATCAAAGGGTGTTTCCATCCATGAGCACTTTGTTGGATTTCTTCAGGCACTTGACACAACAGGAAAAGGCATTTGCGAGACATTTTTAGGCCACCTAGAAACGCTAGGATTGGATCTTTCCAACTGTCGAGGCCAGTCTTACGATAATGGGAGCAACATGCAGGGTAAAAAGCAGGGAGTCCAAAATAGAGTACTGGAATTAAACGACAAAGCGTTATATGTTCCTTGTGGAAGTCACACACTGAATCTTGTTGTTGGTGATGCAGCCAAGTCCTCTGTGTCGTCCATCAGCTTCTTTGGGCTGTTACAGCGACTTTACACTCTTTTCAGCTCCTCAGTTCACCGTTGGACCATTCTCAAAGAACACGTCAAGAATTTTACATTTAAAGCATTGTCAACAACCAGGTGGGAGTGCAGAGTTGAAGCTGTGAAAGCTATTCGCTACCAGCTGCCTGAAATCGTGAAGGCATTAACTGCTCTAAAGGAGTATGCTGCAGAGAAACGAGATGCAGATGTTGTCTCAACAGCTGAAAGCATCTGCCAGGAGCTTCAGAGATGGCCTTTTATGGTAAGCACCATAGTGTGGTACAATGTGTTGTTCCAGATAAACAAAGTGAGATGGTCATCGCATGCAAGGCAGAGGCGGCCTGGCCAGCAGCATTGTAAGCCCCTCACCATGAGAAACAAAGTAAAGTTACGTGCTTTGGATGGGAGCCTCAGGAGATTCCGCCAAGTGGCGGCGTTTTATGGGCATAAATGCACCACAATCACATGCTCCACCTGGGGAACATCCAAGCACCCCCCATGCCGCCCCACCATCGAGGGTAATGAGGACGGAGGAGCCTGCAAAGCATGTTCTGCCAAAGAAAGGTGCCTTCCAGGACTTCAAGATCTCCTTATGTACTTCCGGGGAAAATGGAACCAGAGTGGAGCTCAGAATGCTGCTAATGCGCCCAGAGGCGCTCTCTGTTCAGAGAGACCGCTGATTTGTGCTGAGAATCTAACAGCAATCATTCTATGCAAAGGTCAATGGAAATTGCTTCTCGTAGTAATCAAGAGACGCTGGCTTAGGCTCTAAAGAATAAA

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_00441219_00462553.mRNA True 1323 mRNA 0.46 3 441211 462719

Neighbor

gene id symbol gene type direction distance location
CI01000058_00424190_00424456 NA coding downstream 16248 424142 ~ 424963 (-)
CI01000058_00282795_00302233 RAP1B, RAP1A coding downstream 138978 281394 ~ 302233 (-)
CI01000058_00252333_00267027 RPN2 coding downstream 174184 252283 ~ 267027 (-)
CI01000058_00155300_00224503 CDK5RAP1 coding downstream 216708 155300 ~ 224503 (-)
CI01000058_00018179_00021093 NA coding downstream 419782 17824 ~ 21429 (-)
CI01000058_00482663_00504956 RPF1, SPATA1 coding upstream 19373 481748 ~ 505206 (-)
CI01000058_00570327_00573074 NA coding upstream 107554 570273 ~ 573074 (-)
CI01000058_00599524_00634109 APC2 coding upstream 136460 599179 ~ 634109 (-)
CI01000058_00665144_00668842 NA coding upstream 202317 665036 ~ 668842 (-)
CI01000058_00673067_00690079 NA coding upstream 209499 672218 ~ 690095 (-)
G247474 NA non-coding downstream 7088 433915 ~ 434123 (-)
G247472 NA non-coding downstream 14441 426502 ~ 426770 (-)
G247438 NA non-coding downstream 29521 383731 ~ 411690 (-)
G247437 NA non-coding downstream 80852 360119 ~ 360359 (-)
G247428 NA non-coding downstream 109612 331303 ~ 331599 (-)
G247487 NA non-coding upstream 45935 508654 ~ 509085 (-)
G247492 NA non-coding upstream 50085 512804 ~ 513019 (-)
G247499 NA non-coding upstream 81171 543890 ~ 547221 (-)
G247506 NA non-coding upstream 85017 547736 ~ 547939 (-)
G247592 NA other upstream 183724 646443 ~ 654949 (-)
CI01000058_02859435_02860658 FAM72A other upstream 2395764 2858483 ~ 2861491 (-)
G250230 NA other upstream 3225924 3688643 ~ 3696711 (-)

Expression


Co-expression Network