CI01000058_00570327_00573074


Basic Information

Item Value
gene id CI01000058_00570327_00573074
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 570273 ~ 573074 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_00570327_00573074.mRNA
ATGGCAGATCCAGCGCTGTTGTTGATCATTGTGGGTTCTCTCATGTTCACCATCACTTTCTTTGGCTGTTTCGGAGCTCTGCGCAACATCTCCTTGCTGCTCAACATGGTTCAAGAGAGGACAGAGAAGCTGATGATGAAGGCGATTGTGCGCTATCGTGATGACCAGGACTTGGAAAATGTTATTGATTTTGTACAGAAAAAGTTCAAGTGCTGTGGGGTGGATTCCTTTTTAGACTGGTCTAAAAACATGTACTTCAACTCATCAGACCAAAATCCCAGTCTGGAGGCCTACGGAGTGCCCTTCTCCTGCTGTAAACGGCAGAAGAATGAGACTGTATTCAACTCTATGTGTGGCTATGAGACCCAGAAGATGAAGAAAAATGCGGCCAAACAGCTCGTCTACACCAATGGTTGTCTAGATGAGATCGTCTGGTGGGGAAAACAGAACCTTCTGCTGGTCGGAGGGATGACCCTCGTCCTACTGTTCCTTGAGGTCTGGTTGCGTCTTGTTTAGGGCAGGCAGTGGAATTTCGGCCACCTCAAAAATATATTTGATTTACTAAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_00570327_00573074.mRNA True 570 mRNA 0.46 5 570273 573074

Neighbor

gene id symbol gene type direction distance location
CI01000058_00482663_00504956 RPF1, SPATA1 coding downstream 65067 481748 ~ 505206 (-)
CI01000058_00441219_00462553 NA coding downstream 107554 441211 ~ 462719 (-)
CI01000058_00424190_00424456 NA coding downstream 145310 424142 ~ 424963 (-)
CI01000058_00282795_00302233 RAP1B, RAP1A coding downstream 268040 281394 ~ 302233 (-)
CI01000058_00252333_00267027 RPN2 coding downstream 303246 252283 ~ 267027 (-)
CI01000058_00599524_00634109 APC2 coding upstream 26105 599179 ~ 634109 (-)
CI01000058_00665144_00668842 NA coding upstream 91962 665036 ~ 668842 (-)
CI01000058_00673067_00690079 NA coding upstream 99144 672218 ~ 690095 (-)
CI01000058_00694430_00713270 ADGRL4 coding upstream 121265 694339 ~ 713270 (-)
CI01000058_00958655_00993242 NA coding upstream 385547 958621 ~ 1025837 (-)
G247520 NA non-coding downstream 4658 565032 ~ 565615 (-)
G247522 NA non-coding downstream 6110 563667 ~ 564163 (-)
G247515 NA non-coding downstream 9277 560563 ~ 560996 (-)
G247511 NA non-coding downstream 16413 552741 ~ 553860 (-)
G247510 NA non-coding downstream 17638 552063 ~ 552635 (-)
G247524 NA non-coding upstream 5146 578220 ~ 578438 (-)
G247601 NA non-coding upstream 98022 671096 ~ 671356 (-)
G247618 NA non-coding upstream 154364 727438 ~ 727802 (-)
G247624 NA non-coding upstream 159005 732079 ~ 732345 (-)
G247725 NA non-coding upstream 180820 753894 ~ 754675 (-)
G247592 NA other upstream 73369 646443 ~ 654949 (-)
CI01000058_02859435_02860658 FAM72A other upstream 2285409 2858483 ~ 2861491 (-)
G250230 NA other upstream 3115569 3688643 ~ 3696711 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003906 zgc:113223 coding NC_007122.7 CM002895.2 7253077 ~ 7261717 (-)