CI01000058_00592498_00596709


Basic Information

Item Value
gene id CI01000058_00592498_00596709
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 592331 ~ 597171 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_00592498_00596709.mRNA
GTTTAAAACTAGAGCTGGTACGTTAACAATCAGGATGAATTTTAGTTCCAAAGGCAAGAAGCGGATGGTTCTTCCGACCCGACCCGATCCGCCGACAGTAGAACAGATCATGGAGGATGTGAACCGAGCCTATCCCAATGATCCAGTTTTCACTGTTTTACACGAATCTGCTGAAGATTTGAAGTCCAGTTCCAGCAACAGTGAAGTGGAGGTAAGATACCTGCAGAGCAGACGCTACATAAAGCTGCATGAGCGATTGCAAGAGGAACGTGGCAATCTTGCTCGGCGGAGAGACGAGCTGCGTGCAGCTGGGGAGTCTTTGGAACACAGTGTGACGGAGGTGAAGAGGAGTGCAATGTGACAACTCGCAGGGGCCTGCAGAACATTCACGCCCGCATCTTATGAACTTAAGATTTGCTTATTCAATAGTTGATTGTCGAGCATGGCACTTGTGAATATAACAAA
>TU280966
GCACTGAGTGCCATAGTAAACACTTTACGTGTGTAATATGTTGTTCAGTCATTTACTAGAAGGTTTTGTTTCACAGTGTACAGATTCCCCATTAACATAAACACTAATGCTTTATAAAACGCATATCCTTGTTGTTTAAAACTAGAGCTGGTACGTTAACAATCAGGATGAATTTTAGTTCCAAAGGCAAGAAGCGGATGGTTCTTCCGACCCGACCCGATCCGCCGACAGTAGAACAGATCATGGAGGATGTGAACCGAGCCTATCCCAATGATCCAGTTTTCACTGTTTTACACGAATCTGCTGAAGATTTGAAGTCCAGTTCCAGCAACAGTGAAGTGGAGGTAAGATACCTGCAGAGCAGACGCTACATAAAGCTGCATGAGCGATTGCAAGAGGAACGTGGCAATCTTGCTCGGCGGAGAGACGAGCTGCGTGCAGCTGGGGAGTCTTTGGAACACAGTGTGACGGAGGTGAAGAGGAGTGCAATGTGACAACTCGCAGGGGCCTGCAGAACATTCACGCCCGCATCTTATGAACTTAAGATTTGCTTATTCAATAGTTGATTGTCGAGCATGGCACTTGTGAATATAACAAATTAAAATTAAATTCAGTAGAATACCGAGTGTTTTTCCTGTTGGATGTTTGATGCATTTATTTAATGATTTGTTTGTGATATTTTTGGCTGATTTTTTTTTTTTTGGTCAATGTTAATGTGTGTTATGTGTGTTTAAAAGAAGTACACAGTCCATTCAACAAGTTGTGCAGTCTTTAATGTATTTTATATTATTTAATGTCATTTATATCTAAATTTTCACAATACAAGATTCCTTGAGTTTATGATGAATGGAATTTTTCAGTGTTTACAGACAGTACAACTTGTTGAATATATTGATGATTGTACAGCTATTCTTCACTGGTTAATTTTCATTTGCATTAAATAATTTGTGTTAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_00592498_00596709.mRNA False 465 mRNA 0.48 2 592464 596813
TU280966 True 956 TUCP 0.38 2 592331 597171

Neighbor

gene id symbol gene type direction distance location
CI01000058_00548398_00567030 NWD1 coding upstream 25292 547827 ~ 567172 (+)
CI01000058_00529237_00544012 MEPD, THOP1 coding upstream 48437 529185 ~ 544027 (+)
CI01000058_00517452_00527181 TMEM38A coding upstream 63657 517150 ~ 528807 (+)
CI01000058_00466891_00481927 CTBS coding upstream 110447 466633 ~ 482017 (+)
CI01000058_00435196_00437830 AGTRAP coding upstream 154054 434913 ~ 455744 (+)
CI01000058_00652594_00653181 DIRAS1A, DIRAS1B, DIRAS1, DIRAS2 coding downstream 55522 652335 ~ 654903 (+)
CI01000058_00728698_00738214 NA coding downstream 131707 728520 ~ 738938 (+)
CI01000058_00847992_00862210 NA coding downstream 250484 847297 ~ 862430 (+)
CI01000058_00870909_00930600 ADGRL2A, ADGRL2 coding downstream 274096 870909 ~ 930600 (+)
CI01000058_01239590_01240099 NA coding downstream 642689 1239502 ~ 1240300 (+)
G247337 NA non-coding upstream 85111 506308 ~ 507353 (+)
G247342 NA non-coding upstream 103061 489166 ~ 489403 (+)
G247323 NA non-coding upstream 128483 463739 ~ 463981 (+)
G247317 NA non-coding upstream 159001 428444 ~ 433463 (+)
G247563 NA non-coding downstream 86413 683226 ~ 683442 (+)
G247578 NA non-coding downstream 119697 716510 ~ 716777 (+)
G247617 NA non-coding downstream 130626 727439 ~ 727828 (+)
G247641 NA non-coding downstream 144035 740848 ~ 754686 (+)
G247653 NA non-coding downstream 166782 763595 ~ 763815 (+)
CI01000058_01280337_01289153 DNASE2B other downstream 631796 1278592 ~ 1289874 (+)
G247940 NA other downstream 856184 1452997 ~ 1456447 (+)
CI01000058_01794468_01800421 KISS1 other downstream 1198900 1794468 ~ 1800421 (+)
G250039 NA other downstream 4097595 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 4229563 4864571 ~ 4888216 (+)

Expression


Co-expression Network