CI01000058_01248234_01262911 (PRKACBA, PRKACB)


Basic Information

Item Value
gene id CI01000058_01248234_01262911
gene name PRKACBA, PRKACB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1248234 ~ 1263318 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_01248234_01262911.mRNA
GCCACATATAATGTGGATGCTCAAAAACCACATCTGCATCCAAACACCTGTCTATTCTCCTTCTTACTCACAGGTGATCTGTATTTACTTCTTCATTAACACATACTCTAACAGGAAGTATAACTATCTCAGTTGGTGGCGTGTGATGGCCCAGACAAAAGACCCGAACTTTGGGCAGTCAACAGGCACTAACTCTGCCCTTCAGAAACTGGACACATTAGCTAGCCGATTTTTTCACAAATATCGGAAAGGGAACCAGGAGAAAGGACTAGAGAATGAGGGGCCACATGTGTCAGAGTACACTGGCCTTTGGGATGCAGCAATGAAGGAATACTTGGCAGAAGCCAAAGAAGATTTTTTGAAAAAATGGGAGTGTCCGCCACAGAGCACATCATGTCTGGATGACTTTGACAGGCTGAAAACTCTTGGGACTGGATCTTTTGGAAGAGTCATGCTAGTCAAGCACAGACAGTCAGCACAATACTATGCTATGAAGATTCTGGACAAGGAAAAAGATAATTCAAATTTATACATGGTCATGGAATATATCCAAGGCGGTGAGATGTTCTCACATCTGAGACGGATTGGAAGATTCAGTGAACAGAATGCACGTTTCTATGCTGCTCAGATTGTTCTGACGTTCGAGTATCTTCATACTCTAGACCTCATCTACAGGGACCTAAAACCTGAAAACTTGCTCATTGATCATCAGGGATACATCCAGGTAACAGACTTTGGCTTTGCCAAACGAGTCAAAGGCAGAACTTGGACATTGTGCGGTACGCCAGAGTACCTGGCACCCGAGATCATTCTCAGCAAGGGCTACAACAAAGCTGTTGACTGGTGGGCGATGGGTGTTCTGATCTATGAAATGGCTGCGGGATATCCACCTTTCTTCGCTGATCAACCAATTCAGATATATGAGAAAATCGTATCTGGCAAGGTACGATTCCCCTCTCACTTCAGTTCAGACCTGAAGGATCTTCTGCGCAATCTGCTGCAGGTGGACCTCACAAAGCGCTTTGGCAATTTGAAAAATGGAGTCAGTGACATCAAAAACCACAGATGGTTTGCTACGACAGACTGGATTGCAATCTATGAGAAGAAGGTTGACGCTCCAATCATACCAAAGTGCAGAGGGCCCGGAGACACAAGTAACTTTGATGATTATGACGAGGAAGACATACGGGTGTCTGTCACAGAGAAATGTATAAAGGAGTTCTTGGAGTTCTAGGGCATCTGTAAAAGCTTTAGTAGGAGTTCCTGGGTCTTGTTCTGGTCTTCTTATTCTTTTTTTTCTTTTTCTTTTTTTTTTTCAATTTATGATTACATTTAATATTTTTACTTGAATATGTTAATTAATTTATTTTTACCCACTTTATGGAATACTGCTCCATTTCCCCCCTGTCTGTTACACATTAAAGAAAAGTATAAAGAAAATGTTCAGTATTATGTAATATGTGAAAGAAGCAGAAAGATTTATGTGATGGATAGGTTTAGGGATAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATATCTGTAGAATGTGTATATGCTGAAGAAAGCCTGTGGCTGTTCAGAAATATGAAAAGATAA

Function

symbol description
prkacba Predicted to enable AMP-activated protein kinase activity; ATP binding activity; and cAMP-dependent protein kinase activity. Predicted to be involved in protein kinase A signaling. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Is expressed in several structures, including brain; fin bud; hatching gland; optic cup; and retinal neural layer. Orthologous to human PRKACB (protein kinase cAMP-activated catalytic subunit beta).
prkacb Enables several functions, including ATP binding activity; cAMP-dependent protein kinase activity; and magnesium ion binding activity. Involved in protein phosphorylation. Located in centrosome.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K04345 PKA; protein kinase A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_01248234_01262911.mRNA True 1641 mRNA 0.42 11 1248234 1263318

Neighbor

gene id symbol gene type direction distance location
CI01000058_01239590_01240099 NA coding upstream 7934 1239502 ~ 1240300 (+)
CI01000058_00870909_00930600 ADGRL2A, ADGRL2 coding upstream 317634 870909 ~ 930600 (+)
CI01000058_00847992_00862210 NA coding upstream 385804 847297 ~ 862430 (+)
CI01000058_00728698_00738214 NA coding upstream 509296 728520 ~ 738938 (+)
CI01000058_00652594_00653181 DIRAS1A, DIRAS1B, DIRAS1, DIRAS2 coding upstream 593331 652335 ~ 654903 (+)
CI01000058_01266712_01271962 SAMD13 coding downstream 2435 1265753 ~ 1274437 (+)
CI01000058_01280337_01289153 DNASE2B coding downstream 15274 1278592 ~ 1289874 (+)
CI01000058_01298298_01311989 BMP7A coding downstream 34758 1298076 ~ 1313046 (+)
CI01000058_01348684_01352173 NA coding downstream 85366 1348684 ~ 1352588 (+)
CI01000058_01364846_01374544 NA coding downstream 101528 1364846 ~ 1374584 (+)
G247995 NA non-coding upstream 16388 1230210 ~ 1231846 (+)
G247910 NA non-coding upstream 38283 1201166 ~ 1209951 (+)
G247889 NA non-coding upstream 94252 1148527 ~ 1153982 (+)
G247821 NA non-coding upstream 207890 1040111 ~ 1040344 (+)
G247820 NA non-coding upstream 213888 1034115 ~ 1034346 (+)
G247960 NA non-coding downstream 39983 1303301 ~ 1330860 (+)
G248027 NA non-coding downstream 137670 1400988 ~ 1401268 (+)
G248031 NA non-coding downstream 140066 1403384 ~ 1403656 (+)
CI01000058_00592498_00596709 NA other upstream 651063 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 792490 434913 ~ 455744 (+)
G247940 NA other downstream 189679 1452997 ~ 1456447 (+)
CI01000058_01794468_01800421 KISS1 other downstream 532395 1794468 ~ 1800421 (+)
G250039 NA other downstream 3431090 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 3563058 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003230 prkacba coding NC_007122.7 CM002895.2 8129536 ~ 8150894 (+)
bowfin (Amia calva) AMCG00004869 prkacb coding CM030140.1 CM030140.1 7648790 ~ 7666437 (+)