CI01000058_01266712_01271962 (SAMD13)



Basic Information


Item Value
gene id CI01000058_01266712_01271962
gene name SAMD13
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1265753 ~ 1274437 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000058_01266712_01271962.mRNA
ATATTTATAGCAAGACTAAATGTATATTTCATACAGTATTTTTCAGTTATTAAAAATCAAGAATACTTTATTTACAATAAATTATTAGATGTTTTATTTATAATAAAAAATCGCTTATCTATGTTAAAAATGATGGCTGTCATTTTGTTTATCGCGTTTCTCTTCAAAGACACGGAACCTGTCAAACGAGCAAGGAAAACGCTTTAATTTCCCTTATTTGTGATATTTTTTTCCTCATGTAATTTGGCTGTTCTCAAACTTAAACGCTTGTTTTTCAGCATTGAGGTTTTTTGTATGATAATGAGAATATTACTAAATTTTATTTGTTAATAATAGGATTTATTTTCTGACAGATGACCTATGTTTACAATGTATTTCCTCTAGTTTTCTCTATTTAACATGTCTCTCTAGCCTCTTTTGTTGTCCTGAACTTTTAAGTGTATTACTCAAATGAAAGATCACAGTGCTTAAAATATCAGTTGATTTAAGTGAAAGAATGCATGATCATTTTTTGTATTGCTCAGATCTTTTTTATTATTTTGCAGAATCAGATTTGTGACTACACCAAGATTTATTCAGAAACTTGGCGGTTTGTGTAAGTTTATGGAAAATGGGGCAGTTTTGTACAGCAGGAGACTGATGAAGAGGGAATGAGCAGGCCATGAGAATACATCTGAACACATCTAATGGAATAGAGCAGTCTCACCTCTCTGGCAAACAGGTGAGCAATAGATCAGTTGCTGATCAGATTAATAAGATATTTATTAGTGTTCATGTCAAAGGAGAGCGTCTGTTAATTTAATCAGATTTGGCAAATATGAACTGAATGATTTCATTATAATAGAGCATCTCCCATACTATAGTATTACTTAGAGAACTACAACATGAGCTTGTGATGATTGACTAAAATTGAATGTATTGAATCAGAATCAATTGAGATTTTTTTTAATCCAGCAGTCATGGAAGCCAAGGAAAATGGGTCAGTGGACACCAAAAGTTCTGTGGAGAATGGGCAGCTTATGGATCCTGCCCACTGGGCTGTAGCAGATGTGGTCAATTACTTTAAAGCTACAGGGTTTGAGGAGCAAGCCAATGCGTTCCAGGATCAGGAAATCGATGGCAAATCCCTTTTATTAATGACTCGTAATGATGTTCTGACCGGACTGTCAATAAAACTGGGTCCTGCACTGAAGATATACGAGTATCATGTCAAGCCTCTCCAAACCCAACATTTAAAAAGTAACGTCTCATAGCTGCTGCAGCCATGTGGACGCATGGAAGACAATCACAGCAGGGAAGCGCAGGGTAACTGCAGACAGAACTAATACATTTTATGCATCTTA

Function


symbol description
samd13 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD13 (sterile alpha motif domain containing 13).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000058_01266712_01271962.mRNA False 1343 mRNA 0.35 3 1265753 1272052

Neighbor


gene id symbol gene type direction distance location
CI01000058_01248234_01262911 PRKACBA, PRKACB coding upstream 2435 1248234 ~ 1263318 (+)
CI01000058_01239590_01240099 NA coding upstream 25453 1239502 ~ 1240300 (+)
CI01000058_00870909_00930600 ADGRL2A, ADGRL2 coding upstream 335153 870909 ~ 930600 (+)
CI01000058_00847992_00862210 NA coding upstream 403323 847297 ~ 862430 (+)
CI01000058_00728698_00738214 NA coding upstream 526815 728520 ~ 738938 (+)
CI01000058_01280337_01289153 DNASE2B coding downstream 6540 1278592 ~ 1289874 (+)
CI01000058_01298298_01311989 BMP7A coding downstream 26024 1298076 ~ 1313046 (+)
CI01000058_01348684_01352173 NA coding downstream 76632 1348684 ~ 1352588 (+)
CI01000058_01364846_01374544 NA coding downstream 92794 1364846 ~ 1374584 (+)
CI01000058_01384467_01388274 NA coding downstream 112152 1384204 ~ 1388927 (+)
G247917 NA non-coding upstream 16849 1221593 ~ 1248904 (+)
G247995 NA non-coding upstream 33907 1230210 ~ 1231846 (+)
G247910 NA non-coding upstream 55802 1201166 ~ 1209951 (+)
G247889 NA non-coding upstream 111771 1148527 ~ 1153982 (+)
G247821 NA non-coding upstream 225409 1040111 ~ 1040344 (+)
G247960 NA non-coding downstream 31249 1303301 ~ 1330860 (+)
G248027 NA non-coding downstream 128936 1400988 ~ 1401268 (+)
G248031 NA non-coding downstream 131332 1403384 ~ 1403656 (+)
G248035 NA non-coding downstream 134604 1406656 ~ 1407006 (+)
CI01000058_00592498_00596709 NA other upstream 668582 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 810009 434913 ~ 455744 (+)
G247940 NA other downstream 180945 1452997 ~ 1456447 (+)
CI01000058_01794468_01800421 KISS1 other downstream 523661 1794468 ~ 1800421 (+)
G250039 NA other downstream 3422356 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 3554324 4864571 ~ 4888216 (+)

Expression



Co-expression Network