CI01000058_02049299_02051461 (LRRN2)


Basic Information

Item Value
gene id CI01000058_02049299_02051461
gene name LRRN2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2049289 ~ 2051809 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_02049299_02051461.mRNA
ACTAATTGTTGTATTTTTTGTTTTTTGTTTTTGTCTTATCCAGGTGTGCCCCTAAACCAATCCTAAAACTTACTCTACTGTGCGAGGATGTAAGATCAATGGAGTAAGACTCGAGAGAATTAAAGACATCTGAAGGAGACAGAAAGGGGATTTTGAGATACTTGTGTAACTACTTCACAAGACTGGAGATGAAGAAACAGAGCACGCTTCATCTTTGAGACAATTTATTTAGCAAAATTCAACTAAACCCTTGGCTCTCCTGTCACATGAACTTGAGAGATAAGTGAGAGACTTAAGGGTCTAGCTCACAGTAAATCTACATCATATTATATCAGTTTAATTATGAAAATGGGACAGATTACAATATTTCTTCTGCACACACATCTGCTGCTTGGAATCGCAAGCTCCCTGGTCATTCAATCCATGCCCTGGAGAGTGCCCTGCCCTCACCAGTGTGTCTGCCAAATCAAGCCCTGGTACTCTCCCCAGTCTGTGTACAGAGAGGCTCCTACAGTAGACTGCAATGACCTGCTACTTATCCAGCTGCCCACTTCCCTCCCTCAAGAGACACAAACCCTCCGGCTGCAAAGTAACCTCATCAGTTCTGTGGACCAGAGTGAACTCCAGGGCCTTGTCAATCTGACAGAGTTGGATCTTTCACATAACAGCTTTACCAGTACCCGCAACCTGAGAATAACTGACCTGCCAGCTCTTCTCAGCCTACACATGGAAGAAAACCAGCTGAGACACCTCCCAGAAGCAGCTTTCTTTGGTCTCCCTAGCCTGCAGGAGTTGTACCTAAATCACAACAGGCTTCGAAGCATCTCCCCTGGGGCCTTTAAGGGTCTGGATAAACTTCTAAGGCTTCATCTCAACTCTAACCGATTGGTTGTAATTGACCGTCGCTGGTTCCATGCTTTGTCACAACTGGAGGTGCTCATGATTGGTGGAAACCCTGTGGACACTATTCAGGACCTAAATTTTAAACCACTGGGCTCTTTGCGTAGTCTTGTCCTGGCAGGCATGGGCTTACGCGAAATCTCTGAGCGAGCACTAGAGGGGCTTCAAAATCTGGAGAGTATAAGCTTTTATGATAATCACCTAATAAAGGTTCCAAAAGAAGCATTGCAAAAGTTGCCGGGTCTTAAATTCCTTGACTTGAACAAGAACCCCATTCAACTAGTGCAGAGGGGAGACTTTAGAAATATGCTTCACCTGAAGGAGCTTGGCTTAAACAACATGGAAGAGCTGATCTCTATTGAGCACTCAGCAATGGAAAACTTGCCTGAACTGACCAAACTGGAGATCACAAACAATCCTCGGCTCTCCTATATCCACCCTCAGGCCTTCCAAAAGTTGTTGAGTATGGAAAGTCTAATGCTGAACAGTAATGCCTTGAGTGCCCTGCATAGCCAGACAGTAAGGTCACTGCCCAGCCTTCAAGAAATCAGCTTGCACACCAATCCCATTCGCTGTGACTGCCTGATCCGCTGGGTGGGAGCCGACAATGACAAGCCAGTCCGTTTCATTGAGCCTCAATCCACATTCTGTTCTGAGCCTCCTGAGCTGAAAGCCCGGCGAGTTAAAGAAGTCTCATTCAGAGAGATGGCAGACAGCTGCCTGCCCTTGATTGCCCCAAGCACATTCCCCTCTTACATTGAAGTCAAACATGGAGACAACGTAGCCTTGCATTGTCGAGCACTAGCAGAGCCAGAGCCAAGTATCTACTGGGTCATTCCCCAAGGCGTGAGACTGACTCCATCCAGCAGCTATGGGCGTTATCAGGTTCTCACAGAAGGCACGTTAGAGATTTTTGGAGTCACTGCTGAAGAGGCTGGCTTCTACACTTGTGTTGCGCAGAACCTAGTGGGAGCTGATACTAGAAGCTTGACTCTACAGGTGGAGGGGGGTGACCTGGTTCACACAAATACTCAAAAGACAGAGGATACCTTTGAAGTTCAAGATGTCAAAGAAAGGTATGCCTTACTGACCTGGCAAGCAAGCCGTAACATCCCAACTGCCCATTTATCTTGGGTGGCCAATGGTAGTGTAGAAGACCATCATAGGCACAGTACTCGAATTCTAGCTGGCACCAGGAGATTCAACCTAACTCATCTGCAACCAGGAACTCACTATAAAGTCTGCCTACACTTGGGGCCAAATGACACCTCATGTGTCCATCTAAGGACCAAGGAGGTATCCATGCAAGATCCTTTACCAGACCTGACCCCAGCAGTCCTGTTGGCGGTCTCAGCTCTGCTCCTTTTATTAATGGCCAGAGCATGTAACGGGGGAGCCTCATTCAGTTGGAAAGACCACATGCTGGAGTTTGAGAAACCCCACACCACCATTCTGACCCAGGAGGCGAAGGCTTTCATGACTTCTCCAATACCAGCAAAGCACCCAAATCAGCAGGACACAGACAAAGTCCTATCGGATGGCAGAGGGAAAGATCTCAGAAATACAATGCTGGGGCAAGATTCTCAGGGTCTAACAAAAGAGGCATGCTGAGCAGAATAAA

Function

symbol description
lrrn2 Orthologous to human LRRN2 (leucine rich repeat neuronal 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_02049299_02051461.mRNA True 2521 mRNA 0.47 1 2049289 2051809

Neighbor

gene id symbol gene type direction distance location
CI01000058_01807681_01819809 NA coding downstream 229480 1807671 ~ 1819809 (-)
CI01000058_01694694_01723697 NA coding downstream 325081 1694679 ~ 1724208 (-)
CI01000058_01680894_01693752 NA coding downstream 355084 1680794 ~ 1694205 (-)
CI01000058_01528111_01564969 NFASC, NFASCA coding downstream 484320 1527499 ~ 1564969 (-)
CI01000058_01510773_01517931 NA coding downstream 530107 1510350 ~ 1519182 (-)
CI01000058_02100559_02106600 NA coding upstream 48209 2100018 ~ 2106652 (-)
CI01000058_02192060_02196086 NA coding upstream 139987 2191796 ~ 2196086 (-)
CI01000058_02198525_02205429 NA coding upstream 146687 2198496 ~ 2205437 (-)
CI01000058_02207230_02214219 NA coding upstream 154460 2206269 ~ 2214219 (-)
CI01000058_02235326_02347093 PPFIA4 coding upstream 183517 2235326 ~ 2347799 (-)
G248979 NA non-coding downstream 10149 1982037 ~ 2039140 (-)
G249003 NA non-coding downstream 50587 1995005 ~ 1998702 (-)
G248994 NA non-coding downstream 63904 1984163 ~ 1985385 (-)
G249118 NA non-coding downstream 126255 1921931 ~ 1923034 (-)
G249095 NA non-coding downstream 193035 1856041 ~ 1856254 (-)
G248999 NA non-coding upstream 19923 2071732 ~ 2087153 (-)
G249183 NA non-coding upstream 245756 2297565 ~ 2309005 (-)
G249186 NA non-coding upstream 263771 2315580 ~ 2321692 (-)
G249213 NA non-coding upstream 311572 2363381 ~ 2364654 (-)
G247592 NA other downstream 1394340 646443 ~ 654949 (-)
CI01000058_02859435_02860658 FAM72A other upstream 806674 2858483 ~ 2861491 (-)
G250230 NA other upstream 1636834 3688643 ~ 3696711 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G83198 LOC107727852,LOC107739267,LOC107656005,LOC107556574,LOC107603068,LOC107675837 non-coding NC_056709.1 CM032078.1 19993794 ~ 20007531 (-)
mexican tetra (Astyanax mexicanus) G91633 NA non-coding NC_035906.1 CM008309.1 17677865 ~ 17678205 (+)