CI01000058_02198525_02205429


Basic Information

Item Value
gene id CI01000058_02198525_02205429
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2198496 ~ 2205437 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_02198525_02205429.mRNA
AACGTACAATGTCTAAACTGCAAATTTTAAGCGTTTTTCTGACAGAGAGATTAACTGTAGCTGCGCAGGAGATATTCAAGGCTGTGGAAGACATATTTTCAGAGTATAATGATGAGATTTGTCGCTCCAGACAGGAAATTGAGCTGCTCAGGAAGAGACTGCAGCAGGCAGGAATTCAGATGGACTCTGAAATGCAGCCCTGCTCCTCTGAGACTCAAGCTCAGAAATATACACAGGCATTTTCAGAGGCATGGAGATCTGAACATGACTTAAAGGATACAGAGATGCATATGAAGCTAGAAGTTTATACACAACAGGAGGAGAATGAAGTACAAATCCCTGAGTGCAACGAATCAGCACCTTTATCACCATGTATGGACATTTACCATGACCAGATGCCCAGCAAAGACACTGAACCCCAAATGATAGATAGCAGTGAGAATACTTTTCCATTTATTAACCAAGCACCTCAAATTAAGAATGAACCTGAGACTAATACTGAAACAGGTATCACCTGTCAGGCGCAGCAGCACATCACAAGATACAGCTTGGATGATTCAGGGGCCAGTGATGCATCCAGTGATGTCAGCAGAATCAAAGTCAGCCACATTGGCTCTCCCAGACATAAGACACAAACATTTAACCTGCCCCTCAGAAATCAAGAGATGTTGACGCAGCATAGGATGGAGCTGGCTCAGATAAGAGAGAGATTGGAAGATGAAGAGCGAAAGAAGGCTGCAGCAAAAGCTAGATCCCAAAAGCACAAGCAGAAAATATACGGGAATCCTGAGCTTCGTGAGGCATACAGGAAAAAGGAGAGAGAGAGATATCAAAGACGAAAATCTCAGGGGAAAGTGAAATTTGCTAAAGATCTGAGCCCAATAGAATTGAGAAGGCAACAGAAAAAGTGGAGGAAGAGTTCTGCAGCATACAGGAAAAAGAAAGCATTTCAAGAGGTTTTAGACAACATTAAAGAAGACATTAATCAAGTCATCATAGAGCCAGTGCCGGCCACCTCCTCTGCTCAACATTACAGTGTTTTTTAGTGTTCACTGAGAAATATGTGCAAAATATA

Function

NR:

description
LOC558435 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_02198525_02205429.mRNA True 1075 mRNA 0.42 5 2198496 2205437

Neighbor

gene id symbol gene type direction distance location
CI01000058_02192060_02196086 NA coding downstream 2410 2191796 ~ 2196086 (-)
CI01000058_02100559_02106600 NA coding downstream 91844 2100018 ~ 2106652 (-)
CI01000058_02049299_02051461 LRRN2 coding downstream 146687 2049289 ~ 2051809 (-)
CI01000058_01807681_01819809 NA coding downstream 378687 1807671 ~ 1819809 (-)
CI01000058_01694694_01723697 NA coding downstream 474288 1694679 ~ 1724208 (-)
CI01000058_02207230_02214219 NA coding upstream 832 2206269 ~ 2214219 (-)
CI01000058_02235326_02347093 PPFIA4 coding upstream 29889 2235326 ~ 2347799 (-)
CI01000058_02366247_02370447 NA coding upstream 160789 2364878 ~ 2370756 (-)
CI01000058_02463470_02484038 MDFI coding upstream 256868 2462305 ~ 2484038 (-)
CI01000058_02507677_02545533 FOXP4 coding upstream 302157 2507594 ~ 2546413 (-)
G248999 NA non-coding downstream 111343 2071732 ~ 2087153 (-)
G248979 NA non-coding downstream 159356 1982037 ~ 2039140 (-)
G249003 NA non-coding downstream 199794 1995005 ~ 1998702 (-)
G248994 NA non-coding downstream 213111 1984163 ~ 1985385 (-)
G249118 NA non-coding downstream 275462 1921931 ~ 1923034 (-)
G249183 NA non-coding upstream 92128 2297565 ~ 2309005 (-)
G249186 NA non-coding upstream 110143 2315580 ~ 2321692 (-)
G249213 NA non-coding upstream 157944 2363381 ~ 2364654 (-)
G247592 NA other downstream 1543547 646443 ~ 654949 (-)
CI01000058_02859435_02860658 FAM72A other upstream 653046 2858483 ~ 2861491 (-)
G250230 NA other upstream 1483206 3688643 ~ 3696711 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003424 si:ch211-86h15.1 coding NC_007122.7 CM002895.2 22623284 ~ 22630389 (+)