CI01000058_02207230_02214219


Basic Information

Item Value
gene id CI01000058_02207230_02214219
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2206269 ~ 2214219 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_02207230_02214219.mRNA
ATGTCTAAACTGCAAATTTTAAGCATTGTTCTGACAGAGAGATTAACTTTAGCTGCGCAGGAGATATTCAAGGCTGTGGAAGACATATTTTCAGAGTATGATGATGAGATTTGTCGCTCCAGACAGGAGATTGAGTTGCTCAAGAAGAGACTGCAGCAGGCAGGAATTCAGATGGATTCTGAAATGCAGCCCTGCTCCTCTGAGACTCAAGCTCAGAAATATACACAGGCATTTTCAGAAGCATGGAGATCTGAACATGACTTGAAGGATACAGAAAAGCATGTAAAGCTAGAAGTTTATACACACCAGGAGGAGAATGAAGTACAAATCCCTGTGTGCAACGAATCAGCACCTTTATCACCATGTATGGACATTTACCATGACCAGATGCCCAGCAAAGACACTGAACCCCAAATGATAGATAGCAGTGAGAATACTTTTCCATTTATTAACCAAGCACCTCAAATTAAGATTGAACCTGAGACTAATACTGAAACAGGTATCACCTGTCAGGCGCAGCAGCACATCACAAGATACAGCTTGAATGATTCAGCGGCCAGCGATGTCAGCAGAATCAAAGTCAGCCACATTGGCTCTCCTAGACATAAGACACAAACATTTAACCTGCCCCTCAGAAATCAAGAGATGTTGACGCAGCATAGGATGGAGCTGGCTCAGATAAAAGAAAGAATGTCTTCGAGAATCCAGCACCGTAACTCTGAGCGTAACAGTAAGAAAAGTCAACCGTATGTCTGTCAGGATGAAGTGTCACTATCTGACAAGTGTAAAGCCAACAATGCGAGAAACAGTCAGGCCTGGAGGGATCGTCTGAAAAAAGACCCTGTAAAATATGCTGAGTTCAAAGCTTTGGAAGCTGCAAGAGCAAAGGAGTACAGAAGAAAGAGGACTGCTGCTGCCATAGAAATTGATAAGGAAAATAATCGTGAGCGACAGAGAAGATTCAGAGCCAAAAAGAAGTTACAGTGTAGAAGAACAGAAGAAAAAGAGTGTAAAGCTGAAGAAGAGCCTCTCCCACCTAAGAAAATAAGAAAAGTCTTAACAAGAAACGAGCGGATGAAGAAACGAGAGTATGATAGGATAAAGAAAAGAGAGGAGAGGGAGAGGATGGGAGAACAGAAGAAAAGACAAATTCGTGAAAGAGATGCGTCCCGAAAGAGGGAAAAAAGAAGACAAAAAAAGACAAAAAAGCGAACTATCACTCCACAAACAAATGTTGGCTCTCCAAGTACATCTACAGGCTTTAGAACTGAATCAGCAAAACAGGTGGTAGTGTCACGGATGTCCAAAAAAATTCCGGCTGATGCAGAAAAGTTTGCGGACATGGTAATGGACTTCATCCATCACTGTATTCCTCGTAAACAAGCAGCTTTGAAAGCTAGAGGTCTGAAAACAGCTCGTCGACGAATAGATTTTGATGACCCATCTCAAGAAAAACTTCGATCCATGATTGAAGCTCTAAAGAAGAAGAAGGATACTGCATCCTTGGAGAAGAGGCGCCTGATTGTCACTAGTTTGATGGTTGCCAAAAAGTACAGAAGGCAACATATTGTATCAAGGCGCTTTAACCTTCGTCCAGCATATCTTACCAAATTATCAAATTCCTCATCCAATGAAGGTTTACGTAAAAAACGCAAGCCTGATGCCACTTGCATGGATGTTGTGAACAATATAACTGCTTTCTATCGTAATCCTAAGGTAGCACGAGAACTTCCTTACATGAGGACTGTAAAGAAACAACAACAAACATTCCTCATGGAGATCTCTCTTCAGAAAGCCTATGAACTTTGGAAGCTGGAAAATCCAGAAAAGAATTTTGTGTCCTTTGCTGTTTTCTCATGGCTTCGACCTTCATGTGTTCTTCTTCAGCGTCGGACAGACATAAACCATTGTCTCTGTGAATATTGTACTGGAGTTTTACTGAAGCTTCAGAGCCTGAACAGAATTCTCACTGCTACTAACAATGACAAGTGTATGAAACTCAAGATCAAAAACAAATATGAACTTATCAATTTTTCTCTATGTCCCAAAAGTGGCAACAGCAAGTACCATAATCTAAAGTGTATTAACAGAGCCTGCTCCGACTGTGGTGTATCGCTTCTCAAGGAAAAGTTCAAAGCGGTACTAGATTCGTATGGCAAACAAGAAGTGTCCTGGCAAAAGTGGGAGAGTAAGGCTTTCAACCATGATGGTAGACAAAAGACCAAGAAGGTTCAATCAACTAAGTGTGGCACATTCAAGACAATGTTTGATGAGTTATTGGGCGAAACAGACTTTTTGGCTAAACATCTCTTTACAGCCAACTGGCAGAACGACCAGTTTTCCCTTATCCGGGAAAAGTTGCCCAATACTTGGTCGCTACTCGTCATGGATTTTGCTGAAAATTACTCGTGCATATCCCATAACGAAATGCAGAAATGCACACAGCAGATAACCGTTCACCCAATTGTTTGTTACTACAAGTGTCCCACAGAGGGTCACAATCACACGGTCCAGGAAGCCTTGGTTTTTGTTTCGGATGACCTCAACCATGATGCCAATGCTGTTCACCACTTCGAAACTCTGGCTATAAAGCACCTAAAAGAAAAGCGAGGACTGAAGTTAGAGCACGTAGTTGAATTCACAGATGGCTGTGGCGCACAATACAAGTCAAAGGTGCCATTTGCTGATATTAGCAACTCCAAGGCTTCTCATGGTTTGTCTGTTGAAAGATGTTACTTTGGATCCCGCCATGGCAAGGGGCTCAGTGATGGTGTCTCTGGGGTTGTAAAATCATCTGTTCGATGTGCTGTCCTGTCATGTAGGATCACTATTAACAATGCAGAGGAGTTGTATAATTTCTGCAGTCTAAATTTGACAAAAGATGGCTGTGATGGGCAACTCTGTACATTTTACCTGGTTAAACAAGGTGAAATTCAGCGTGACCGTTTTATAACACAAGTGAAGTCTGCCCTTGCTGGAACTCGTTTTCTCCATTCTGTACGGTGTGTTTCTCCTGGGGTCCTGGATACTCGCGTGTATTCATGCTTCTGTGATGGCTGTATGAATGTTGATGATGGAAACCAGTGTTCTAACTCAAAATATGTCCTTCCCTGGCAACGACGTACCTTGAACATAGATGCTGAAATAGTTGATTTATACCAGCATGAAGAGGAGAACACCTTACCTTCTGCTACAAGTGAAGATGACCAACTTCCTGGTGAACAAACAGAAGATCTCTGGATGAAACTTACTAACCCAGAACTTCCAACTGATAACTTGGATTTGCAGATAGAAGATCTCAGGGATTATGCTGTGCTGTACACCTGTCCACCCAAGTGGTGCTTGGGTAGAGTTCTTCAACCACCAACTGATGGAGGAGTCCAGATGAAGTTTCTGGAGCAGTGCGGAGTCAGCAATTTGTTTTCCTGGCCCAAGACTCCTGATGTTGAACTATTAGATCCAGTCCACATATTTCATGGACCTGTAAACTTGATTGGACACCATCCAATCTCTGTTGATGAAGAGGAGTTTAAAAACATTAATGAGAAATACAAGACAATAAAGAAGAATGCATGTTAGTTGATATCAAGCATAATTCCAATATGGAGAACTGACTTCCCATGAATGACATTTCAGAACAAGTATATACTGACTGCCTCAGTAGTTACTCACGTTGAATTTAATGCTACGTTTAATTACCCTTTTGCAGATTTTTGAGAGAGGAACATGAATTGATTCTTTAGTGTCATCTGTGCTGATTTGAGTTAACTTATTCTAGTTAAATGAAGTGTGCACTAGCTTGACGGCACAAATCCTTTGCCTGTTATACATGTAGATTGTTAATAATGCTTAAATGTCACACTCCCTTATCAGCTCTAAACTAAGTTTGCATTTACTTTTAAATACAGACAAAATTTCTTAAATATGGCTTGGTTTTTTTTGTTTCAGGCTGTCTAAACAAGACAACCTGAACCACCCCCCAAGTGGTGTCCCCTCAGAAATAAGTGCATGACGCCCATGGATAAACTCATCTATGCACTAGTTCGCTTTCACTGCCTCGTGTTTATACTCGCGCTCTTTCAAACTATTTATTTCATGGAAAATGTTTTCAAAAAATGGGTTCATAATGGGAACCATGAAGACACTATATATGAAGTGTCTGACAGAACCCCCTAAGGTTCAGAACCTTTTCTTCTAAGATTTACATTTATGTTTCCATGGCAACAGAAAGTGATCCTCATGGCAGTGAGAAGAAGGATGTGGTGTGTTATTTTGAAGGTGAAAGGATGTAAATTGATAAATTGATTTGTTGAGGGGTGAGAGATTATGCAGCATATATTCCTCAATTCTTGAACTCTTGAATCAAACTTAGAGGGAGGGATGGAGATGTCCACTGTTTTCTAAGGATTTTGATTTATAGTTTGTAATTGACCAAAGGGCTTTTTAACACAGATGAACAGTCATTTGAGGAAAAACACTGTTCTAGTGTTTAAACTTGTTTCCTTCAAGAATCTCTTGAATATTACAAAACTGTAATAAA

Function

NR:

description
LOC558435 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_02207230_02214219.mRNA True 4540 mRNA 0.41 6 2206269 2214219

Neighbor

gene id symbol gene type direction distance location
CI01000058_02198525_02205429 NA coding downstream 832 2198496 ~ 2205437 (-)
CI01000058_02192060_02196086 NA coding downstream 10183 2191796 ~ 2196086 (-)
CI01000058_02100559_02106600 NA coding downstream 99617 2100018 ~ 2106652 (-)
CI01000058_02049299_02051461 LRRN2 coding downstream 154460 2049289 ~ 2051809 (-)
CI01000058_01807681_01819809 NA coding downstream 386460 1807671 ~ 1819809 (-)
CI01000058_02235326_02347093 PPFIA4 coding upstream 21107 2235326 ~ 2347799 (-)
CI01000058_02366247_02370447 NA coding upstream 152007 2364878 ~ 2370756 (-)
CI01000058_02463470_02484038 MDFI coding upstream 248086 2462305 ~ 2484038 (-)
CI01000058_02507677_02545533 FOXP4 coding upstream 293375 2507594 ~ 2546413 (-)
CI01000058_02548351_02550351 NA coding upstream 333791 2548010 ~ 2550548 (-)
G248999 NA non-coding downstream 119116 2071732 ~ 2087153 (-)
G248979 NA non-coding downstream 167129 1982037 ~ 2039140 (-)
G249003 NA non-coding downstream 207567 1995005 ~ 1998702 (-)
G248994 NA non-coding downstream 220884 1984163 ~ 1985385 (-)
G249118 NA non-coding downstream 283235 1921931 ~ 1923034 (-)
G249183 NA non-coding upstream 83346 2297565 ~ 2309005 (-)
G249186 NA non-coding upstream 101361 2315580 ~ 2321692 (-)
G249213 NA non-coding upstream 149162 2363381 ~ 2364654 (-)
G247592 NA other downstream 1551320 646443 ~ 654949 (-)
CI01000058_02859435_02860658 FAM72A other upstream 644264 2858483 ~ 2861491 (-)
G250230 NA other upstream 1474424 3688643 ~ 3696711 (-)

Expression


Co-expression Network