CI01000058_02379628_02392648


Basic Information

Item Value
gene id CI01000058_02379628_02392648
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2378584 ~ 2392780 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_02379628_02392648.mRNA
GTATAAAAAGCCATCAGTCTCCTTGTAGGATGGAGCACAGCTCTAAAGAAATGCCATAGGCTGTTGATATTCTTACAGGCAATATTAAGGCACCTAAATGGCATCATGAATGCATGATATGGTGGTTAAATGGGAAATGTGTGTATAAAAATAGATACCTAAAATTCTCAATTCTGTTTTTTTTATACACCACTATTTTTAGGAAATTTTAGGACTAAATATTACGACAAATATTTTAGGAAATGCCAAGTTGCATGATTTATCTTTTAGGTTCCTCTTTAGGTTCTACACTTTAGTCTGTTCTTCATTTAAGCTGAAGGCTTTATATTGTGATTAAACCTTATAAATATGTAAAGCCACAAAAATAGGCAGCTTTTTATCATTTATCTACACATATATATATATATATATATATATATATATATATATATATATATATGTATTTATATATATAAAGATGTTAGTTTGAAAATGTTAGGTTGTTTCTACCTGTTTTAAGATGATCAAAAATGATAAATATTTAAAATATAATATATAAATTAACTTATTTATAATATATATGATCTCTCCGATGACCCTGTCGGGGTTTATTTGCAATAACAAAAGTTTTAATATATGAAATACATATTTTAAAATATAATTTATTCCTGTGATGTCAAGGCTGAATTTTTACACTACTCCAGTCTTCAGTCACATGATCCTTCATAAATCATTCTAATATGATGATTTGCTGCTCAAGAAAGTTCAGAAGAACAGCATTTATTTAAAATAGAAATCTTTTGTAACATTCCTAAATGTTGTTACTTTTACTGTTTTTAATACAGTATAAATAATTGCTTTGATCCTTTTACTTCATATTCACTTCCTCTAACTATTTCCTTTGCAGACACCCCACCACTCTTCGGGCTGGACTGCACGGCGACAGCAGCCCGCCCCCCGCGTCCCCCAGCCATGTCGTCACGCATCGGTCTGCGCCTGCAGCTCATGCGGGACCAAATGCAGCAGGAGGAGCAGCGGGAGCGGCAGCAACAACAGGCAGCATCCATGCATTACATGCAGCATCGCATGCCCGGCCCACCTGCACCCTCGTCAGCCATCAGTGCACCAACTCACTTCCAGGCGCCCATGCAGGTGCCTGTTGAAGTGCTAAAAAGTAGTGGGCAAAGTCCAGAAGTCAGTGGGTCGTGCAGGACTGACCACGGCTTTGGTGTGCCGGATTACATTTCAACCAAGATCAAAAACAAAGTGAGGAATATTTGTAGAAGAATGCGGTGGAACAGCAGCCAGGTGCAGACCCATCTTGAGAACCCCACAGACTACCACATTCGACAGTCTCAACGGCAGCAAGTCAAGGAGTACCTGTCCACCACATATGCCACCAAGCAGACTGTACACGCTGTCACAAGCTTGGTACAGCCCTCTCCACCCACCATGGCCCAGGGTCAGACAGGAACCATCCAACCATCCATGCCCTCTCCTTGCATGCGCACTGAGCAGCTCATGACCTCCGCTGGGAACAGTGCGCCCAACAGTCCCATGGCCATGCTCAACATCGGCTCCAGCCATGAGAACGAGATGGATGAGGTTATTGATGACATCATCAGCCTGCAGTCCAGTTATGATGACATCCAGGCTTATATTGACCCTGTGGTCCAGATGCCAAACACACTCCCACTGTCCAGCAGCCATTTGGATGTGTACACGGGGCCAGGTATGCCTGGATCAGCTATCGCCATGACCAGCAACTCCTGCCCTGCAAATCTGGCCATAAAGAGAGAACTGTCAGTTGAAAGAAGGAGAAGGTTTAACATCAATGATCGAATTAAGGAGCTGGGCACCATGATTCCCAAAACCAATGATCTGGATGTGCGCTGGAATAAAGGCACTATTCTGAGGGCCTCTGTGGAGTACATTAAACGCATGCAGAAGGACATCCAGAGAACCAGAGAGGTGGAGAACAACTTCAGGAGGATGGAGATGGCCAACAAACAGCTGTGGCTTCGCATTCAGGAGCTTGAAAGGCAGGCCCGAATGCACGGCCTCCCCAGCACCTCTCCATCCGGCCTGAACAACACTGACGTTCTAAACCCCTTCGTCAAGCAGGAGAACAGCCCTGAAGAGAACCACCTCCCACATCAGCCTCATCTCCCTCCTCACTACCCCCAGCATCAGCAGCACATGGTGGGCAGCTCCCAGCACTTTGACTATGCCCAGTCGCTGGACTTGTGCGACGGCGGCATCCCGGGATATCAGGATGGCATGGGGGACCTCGGCTCGTTGGGCGGAGGTGTCGCACCTATGGGAAAGAAGAGTGAGCTAGGATTCTTGCTGATGGAAGAGGCCCTGTCGCCGCTGGGAGGAGACCCGCTGCTGTCCGCCATGTCCCCCGAGGCTTCTGTTGACAGCAGCCGCCGTAGCAGCTTCAGCATTGAGGACTCAGACATACTGTGACCTGGACAGTCTTGGGTGTCACTGCACCACATTCATATGATGCGACATGTACACACACACAGATATCACATTTAGTCTGGCACACTGTTAATGGGGAAAGGTACGATTTTGATGCGTCTTGCCACCATGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_02379628_02392648.mRNA True 2583 mRNA 0.45 9 2378584 2392780

Neighbor

gene id symbol gene type direction distance location
CI01000058_02348646_02354404 TMEM183A coding upstream 23499 2348615 ~ 2355085 (+)
CI01000058_02227590_02229507 MYOG coding upstream 148563 2227418 ~ 2230021 (+)
CI01000058_02052152_02085378 NA coding upstream 293129 2051963 ~ 2085455 (+)
CI01000058_02028188_02037502 MDM4 coding upstream 340956 2028149 ~ 2037628 (+)
CI01000058_01957358_02009847 ATP2B4 coding upstream 368737 1957358 ~ 2009847 (+)
CI01000058_02578534_02589495 NA coding downstream 185281 2578061 ~ 2590541 (+)
CI01000058_02592534_02600835 NA coding downstream 198413 2591193 ~ 2601755 (+)
CI01000058_02629861_02631891 NA coding downstream 236910 2629690 ~ 2632294 (+)
CI01000058_02635467_02636768 NA coding downstream 242396 2635176 ~ 2636985 (+)
CI01000058_02650808_02653235 NA coding downstream 257656 2650436 ~ 2653371 (+)
G248356 NA non-coding upstream 56672 2317218 ~ 2321912 (+)
G248173 NA non-coding upstream 97766 2042171 ~ 2280818 (+)
G248372 NA non-coding downstream 5906 2398686 ~ 2398891 (+)
G248373 NA non-coding downstream 7605 2400385 ~ 2400642 (+)
G248374 NA non-coding downstream 9083 2401863 ~ 2402123 (+)
G248384 NA non-coding downstream 23473 2416253 ~ 2416481 (+)
G248404 NA non-coding downstream 62907 2455687 ~ 2456585 (+)
CI01000058_01794468_01800421 KISS1 other upstream 580852 1794468 ~ 1800421 (+)
G247940 NA other upstream 922137 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1090314 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 1781413 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 1922840 434913 ~ 455744 (+)
G250039 NA other downstream 2301628 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 2433596 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013914 NA coding CM030125.1 CM030125.1 46930575 ~ 46946388 (-)