CI01000058_02463470_02484038 (MDFI)


Basic Information

Item Value
gene id CI01000058_02463470_02484038
gene name MDFI
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2462305 ~ 2484038 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_02463470_02484038.mRNA
ATGGGAGAACAGAAGGAGCTGACGCACGCTTCAGTGCCACAGCGGTATAAAGGCAGACTTCTGTTCAGCAGCGTTACCGAGGCAGGCTTCAGTGTAGGGAATGAAACCGGTGAGCAGACAGCACAGAATTCAAACACTCCACCCATGGAAAAGACAGGAGACGTGGAGAATGGCAACAACAACAACAGCCTGTCCCAACCAGACCTCACTAGCACTCCTGGCAAAAGCATAATATGTAAGCATGAAACAATTGGACTACGTTACCCAGCAGGCCCTTCACAGTTTGTTTGTGCTTGGACAGGAAATGATGTGGGACCCCTAAGAGGCTGTCACAGCCGTGAGTGTGTTTGCACAGTCACAAGTTATGAGAAACTTACTGAGAGAAAGTATGCTAAGGACAGGCCCTCACTGTGTGTGTGCGCTTTGACAAAAGACATCCTTGTTTGGAAAGTAGGGGATTTCCCTCTAAACGATCAACCTCAGGCACGGTCTACACCCATACACCCCACGCTAGCTAGCTCGACCGAATCGGCAGCGCTGCTGAGGAGAGACAGCAAGCCACACAGCAACGGGGTCAGAAACGGAACTTTTTCACGAGCCGTCTCGTCGTCGTCCTCATCTTCATCCTCAGCCCATAAAAACCCCAAGAAGCTGCAGTCGAACCCATCCATCAACAGTCAGAGCAGCAAGAGGAGCAAAGGTAGCTCCAAATCCAACAGCTCCCAGATCCCCACAGAGGCTCAGGATGATTGCTGTGTCCACTGCATCCTAGCCTGTCTGTTCTGTGAGTTCCTCACACTGTGCAACATCGTGCTGGACTGCGCCACTTGTGGCTCCTGCGCATCAGACGACTCGTGCTTCTGCTGCTGCTGCGCTTCAGAGGAATGTGGCGACTGCGACCTGCCCTGTGACATGGACTGCGGCATCATCGACGCATGCTGCGAGTCTGCAGACTGTCTGGAGATCTGCATGGAATGCTGCGGCCTTTGCTTTTCCTCCTGAGACTCCCATAGGGGGCGCTGCCTCTTTCTCTGTTTTGAGACCTGAGAAGAAACAAGCTAAGAATGACATCAATGATCTGGAGTGTGTGAGTTACAGTCTAGTAGCTTTCTTTTAAACTGTCTTGCTAGGAGCAGGGTTAGTTGTCGTACACTAGCGGTGTTATTCGGCGGTAGTCTTTATACATATGAACTCTTTCTGGACTGATTTCTGCTTAAAATGTTTTGTTGAGTCTACATTGGCATGATGCTGAATACAAATTCATCCAAAAGACTTATTGAGGCCACTGGGAAAGGTCCAAAAACATCTGCAAATGTCAGTGTTTGTTAGTTATTTGAAATCGTCTTAGTGCCAAGCTTTTGATAAATGCACAATCCAGTGGTTTAAGAATTCCACAATAATGCACACCATAAAGAGCTTGAATTGCAACTCAGATGTGTTTTAGAAAACAATGCAGTCTCCTAAAACTATTCCAGCGTTGAATTCTCAAGGAAGATGTATCCAAAGTAATCCCAAATATCATCTCTCAGTACGCACATTTACTGTAGTACACTGGTGTAGTCCTTTGAGGATTACAAAAGCCATAAACTGTGAGTGTGAAACTCATAGATGTATGCGAGTGGGAGAAAGATGTGTGTATTTAATATATGGTGCGATATTATAGTTGTATCATAGATTGTATATAAACGTGAAGAGAATCCTGACAGTCTCTACATTTGGTCCTGTGATGTTTTTATCCTCACTCTTTCTAGCATTTTCACTTCATCAATCAGTCTTCTTGCATACTGGAATATTATACTGTAAACCGTTGTGAATTGCTCCATTTTTTTTTTTTTTTTTTTTTCCAAATGTGAAATATCTGTCTTGTAATTCCAAAACTTTCCATTTAAATCAGTTTTGTGTGAATTTAAATGTTAGTTTTACATATCTACCTTTTTTTTTTTTTTTGATGTAGTAAATGCATTAGCAGTATTATTTTTTCCTTTCCAAAAAAAAAAAAAAAAAAAAGAAATCTACAGCAGAACGTGACGTAGTCTTGAGAATCAACACACCATAATCCATACCATAAACAGTACATAATCATCTTACAGAAAGATGGTGAAAAGCAGTGCATTGATTTGAATCGTTTACATTTTAAGAACATGTTTCTATTGTTGCTTGCAATAAA

Function

symbol description
mdfi Is expressed in several structures, including neural plate; paraxial mesoderm; pectoral fin; pectoral fin bud; and presumptive diencephalon. Orthologous to human MDFI (MyoD family inhibitor).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_02463470_02484038.mRNA True 2167 mRNA 0.43 7 2462305 2484038

Neighbor

gene id symbol gene type direction distance location
CI01000058_02366247_02370447 NA coding downstream 91549 2364878 ~ 2370756 (-)
CI01000058_02235326_02347093 PPFIA4 coding downstream 115212 2235326 ~ 2347799 (-)
CI01000058_02207230_02214219 NA coding downstream 248086 2206269 ~ 2214219 (-)
CI01000058_02198525_02205429 NA coding downstream 256868 2198496 ~ 2205437 (-)
CI01000058_02192060_02196086 NA coding downstream 266219 2191796 ~ 2196086 (-)
CI01000058_02507677_02545533 FOXP4 coding upstream 23556 2507594 ~ 2546413 (-)
CI01000058_02548351_02550351 NA coding upstream 63972 2548010 ~ 2550548 (-)
CI01000058_02558119_02571796 NA coding upstream 73990 2558028 ~ 2573230 (-)
CI01000058_02859435_02860658 FAM72A coding upstream 375185 2858483 ~ 2861491 (-)
CI01000058_02863488_02874502 NA coding upstream 379219 2863257 ~ 2874660 (-)
G249028 NA non-coding downstream 7101 2454798 ~ 2455204 (-)
G249248 NA non-coding downstream 17194 2444792 ~ 2445111 (-)
G249238 NA non-coding downstream 29644 2432448 ~ 2432661 (-)
G249237 NA non-coding downstream 30224 2431863 ~ 2432081 (-)
G249222 NA non-coding downstream 51971 2410000 ~ 2410334 (-)
G249029 NA non-coding upstream 142236 2626274 ~ 2628453 (-)
G249277 NA non-coding upstream 147122 2631160 ~ 2638355 (-)
G249287 NA non-coding upstream 179871 2663909 ~ 2664147 (-)
G249294 NA non-coding upstream 189365 2673403 ~ 2673652 (-)
G249296 NA non-coding upstream 193012 2677050 ~ 2677266 (-)
G247592 NA other downstream 1807356 646443 ~ 654949 (-)
G250230 NA other upstream 1204605 3688643 ~ 3696711 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003421 MDFI coding NC_007122.7 CM002895.2 22109887 ~ 22169026 (+)