CI01000058_02592534_02600835


Basic Information

Item Value
gene id CI01000058_02592534_02600835
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2591193 ~ 2601755 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_02592534_02600835.mRNA
CTATTAAAATGGAGAAAAAAAACAAAAAAACATCTCAAATGTACTCTGTAATTTGTTAACACTGTTTAGGAAAGCAACAGGGTGTGCTCTTCATGCGAGTAATGTTACCTACATCATGCTACAACCGCACGCATGGACAGATGTGGTCAGACGCTCTACAAACAAACCCAAACACACCACAAAAAGTCTATTTTAAGGGTGTGAAAACAGAATATATTTCCAATTTACAAAATAGCAGTTCATAAATAACAAGCCAAAGCTTATTTTCCCCTCACTCAACATCAACGGTGTTTAAGGCGGGACTGGCATGTGAACGTTTAGAAAAAAACATCCTGTGTTGCACCGAGGGGAAAAAAAGAACCAAACTTAACCTTCTTTCAGCGGTACAAACCGGGAGGACTTGTTACACTCGGGTGCTTTTGTTCAGCATGCACCCTGCATGATAGCCACCTCCGAATCAGGAGCGGAGAGAGGAAGACAAAGGCACCCTTTTTTTTCCCCAACCGGTGCCATTCAACCTTAAAGGAAAAGTAAAGCTATGCCAAAAGCTGCTTCTTTTGAGGTTCGGGCTTGATCCTCCTGGAATTAGGAAGTTCAGCTTTCTCCTTGTAATGTGTCTAAAAATGAAGACTTGAGCTGTTTCTGTTTGCTTGCATTGGATACGAGAAACAGAAGAAGAAGGGGGGGGCGAGATGAAAGAAAAGTTTCACAGATGTAATATAAGCCGGCATCCAAAACGTCAGTCATGTGAGGGATTTGGCAAAAATAATCATACCTGCTTGTACAACCTCTTCAAGCTCTGAGTAACTACAGGCGCACAATGCGCCCGCTCCTTTCCTTTCGCCACTCCTGACGGCAGCCACTTTATTACTCACGAGTGTGACAACTTGTGGGATTGCTTTGTATCTGAATGGCATATTTACGTGAAGCGTGGCTTTCGGTAGCAGTTGCTTGTAATGTATCAAATGCATCACTGTCAGCTGCCAGAGGAATCTCCCACCACGAATGTGTTTGTCCACACAATCGAAAGCGTTACGCACCATCGCTTATGGAGTGTTGGCCAGGCCAATACGAATGTAACTTTCCAGAGAGACTATCTCTACTGATAATCACTAAAGGATGAATTATTGTTTGCCAGAGAACCAGACTTACTCTATTTTGATGCTGGAATGCTCCGACACAGCTGGTGACCAAATGAGCTTCGTCTACAGCGGCTGCAGGCAGACATACTGGGCCTGTTAGCAGCTGTCCACCCAGGGCTACAGGACGAGGTGTAGATTGTACGACGGGATCGGGTTTACAGGCCTGGGCCAAGGTTTCGTAGATCTTAACTTGGTCCCCATGACTCATTACAGTTGTAGCCTGCAGAGCTGTCCAATTTCACGATGTGCGTTGCTCACCTCTAAGTCCCCAAAAATGTTAAAACAAAAAGCCTGCTTGGAAAAAAAATCCCTCGCCCTCACCAGTTACCAGGGCAACAACTTTGAGAGTGGTGCTGTGCATATTTCTTTTGCTTTTTTCTTCGTCTTTTTGTTTCCCCTGGGGGTTCTCCAATTTTTGGAGCCTGGAGAGGGCCGTTGGGAGGACAGAGATGGAGAGCTGAGGGGTCTCTTAAGCCGAGTGCAGAGCGGGGGCTTCTGGGATGGCGTAAGCATTTCACACGCAGAAACCCAATTAGAGAGTCTAGACTACCTCACAGGTACCTATGATCTGCCATCAGGACAGCCAACTCAATATGGCCTATCTGTCCAGACATCTGAGATCTATATGCCTTTATCCACTCATTCCATCTGCGCCGTGGACAGTTTAATTAAAGCTACCATTACGACCAATTTGCAGAGTCCATTATGGCCTCTTAATGGTGGACGGTGCCAGAGAAAACAAAGACTAAAGCAAATGACACACGCACATGGAGACGGTTCCCTCTCTCCAACCACTTCAGCCCCACTTTCCCCCTTCCCTCTCGACTCTTTTTCTCTTACCCTCTATGACTCGGCTACCTCGTATCTGTCCGTACCCACAATCCCCTCCTCTCCCGAGATGCCTGCCTCCGTTCCTCTGACTCAAACTCATCCTGGTGCTCTCTTTCGCTCCTTCGCCATCTCACCCTCCCTCTGCTCGCATTCTCCATCACTCTGCTGGGCTTCTGTTTGTTTGGTAAAGACTGTTGAGTCTTTGACGTCTGCAGATGCCTGTGATTTCTCCCAGGCTCCCGAGGGGCCCAGGGAGAGAGTGCTTTGTGCTCTGACAACGCAGGTCTGCAAAGAGGGAGCTGGGACTGTTTTTCTGCTCCAACGCTTCTTGGCAGGGTGTTTAACCAGTATCGCTGCACTGTGCCGCTTCCAGGTGAAAGATTTGGGCTTGGAGGAAGAGACTAGACTAGACAATAAACAGCGCGACAAAGTGCATTCACTTAGTGTTTCAATTTAATAAAAATTATTGTACAGCTTTGGTCAACTCATTCCATGCATACTATACCATTTATGAATATTTTCTGTATTTTTTATTTATTTATTTATTTAACCTTTTCAGTGTTTTTACTAATTATGTATTTTATTTTAAAATTAATATTATGTCTAATTTTAAGCTTTTATATTAAAATCATTAGTAATTATTGTATTTTTAAAATTTGTATTAACAATTATTTTTGAGCTTTAAAAAACTAAAATGAGTAAAATTTTACTACATAATTGTATATTTATTTAAGCTGAAAAATATTCAAAATAATTAGAAAACATTTATTTAATTTACAACTATAATTATGCACTTCTGTTCGCTTCTCTTTACATTTAATACAATATAGTTAAATTAATACAACCTTGCTGTACCTGTACAATGACAAAGAGCATGACTCGACTTAAAGTTTGACATCTATCAATAAGTCAATGAATTTACATAACATTTTAGCGAAAGGGGCTTTTGAAAGGATTCCTGAAACACCCCATATTCTCTTTCAATCATTCCTTTAATTTATGCTGGGCTTCATAGTGACCCCCTCCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNATATAACAAGTAATATTTATTTATTTATTAAGATGGTACGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGTATGAAATGAGGATAGCAGAGAAAGACATTAAAACTTGATAAATGACTTTTTAGGAGGCTCTGCCATGATAACACTTTACTGCTTGCTTTGCCATTTTCAGAGCCTTCCTCATTAAAGTCATTTGGCTTCAAGGCCAAACTCTCCATTCATTTAAAATCAAATGAGGGAACTCGATGATGAACTAATTCATTCATCAGATTCTTATGAACAATGGCTATCTGAGATGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_02592534_02600835.mRNA True 3350 mRNA 0.41 5 2591193 2601755

Neighbor

gene id symbol gene type direction distance location
CI01000058_02578534_02589495 NA coding upstream 652 2578061 ~ 2590541 (+)
CI01000058_02379628_02392648 NA coding upstream 198413 2378584 ~ 2392780 (+)
CI01000058_02348646_02354404 TMEM183A coding upstream 236108 2348615 ~ 2355085 (+)
CI01000058_02227590_02229507 MYOG coding upstream 361172 2227418 ~ 2230021 (+)
CI01000058_02052152_02085378 NA coding upstream 505738 2051963 ~ 2085455 (+)
CI01000058_02629861_02631891 NA coding downstream 27935 2629690 ~ 2632294 (+)
CI01000058_02635467_02636768 NA coding downstream 33421 2635176 ~ 2636985 (+)
CI01000058_02650808_02653235 NA coding downstream 48681 2650436 ~ 2653371 (+)
CI01000058_02883775_02884290 NA coding downstream 280409 2882164 ~ 2885704 (+)
CI01000058_02911431_02958568 SRGAP2 coding downstream 309676 2911431 ~ 2958568 (+)
G248432 NA non-coding upstream 90876 2500110 ~ 2500317 (+)
G248406 NA non-coding upstream 129645 2460916 ~ 2461548 (+)
G248405 NA non-coding upstream 131796 2459047 ~ 2459397 (+)
G248404 NA non-coding upstream 134608 2455687 ~ 2456585 (+)
G248384 NA non-coding upstream 174712 2416253 ~ 2416481 (+)
G248516 NA non-coding downstream 71620 2673375 ~ 2673662 (+)
G248519 NA non-coding downstream 83520 2685275 ~ 2685634 (+)
G248574 NA non-coding downstream 265467 2867222 ~ 2878788 (+)
G248566 NA non-coding downstream 289596 2891351 ~ 2908197 (+)
CI01000058_01794468_01800421 KISS1 other upstream 793461 1794468 ~ 1800421 (+)
G247940 NA other upstream 1134746 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1302923 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 1994022 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 2135449 434913 ~ 455744 (+)
G250039 NA other downstream 2092653 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 2224621 4864571 ~ 4888216 (+)

Expression


Co-expression Network