CI01000058_03239666_03330001 (CDH4)


Basic Information

Item Value
gene id CI01000058_03239666_03330001
gene name CDH4
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3239666 ~ 3330003 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_03239666_03330001.mRNA
GCGTTCGAAACCTGTCAGCAAATAGAGGAGGTTTCTTTTGAGAGCAGTGACCCAAAGTTCAGCGTTCGGCCGGATGGCTCTCTTTACGCAAAGCAAGATGTGACGAATCTAACCGAACCGATTCAGTTCATGGTGACAGCCAGAGACAGCGCGGGCAAGTATATCTGGGAGACCACTGTTAAACTGGCCCCTGTCGGACACCCACTATCTCCTCCTATTAACCAGGCAAGGACAAATTATTTATATCAAATATTATTTCTGAATATCAATTGTCTGTGCCAGTTGTCTATTGCTGGGGATGGTATTTATGGCGGATCCTCCCACAACCACTATCAAAATCCCAGGCTCATTACGTTTCCACGACAACACCAGCGAGGCTCGTCCAATGGGCTGCGGCGACAGAAGCGAGACTGGGTCATTCCACCAATCAACGTGCCTGAAAACTCCAGAGGACCCTTCCCTCAAGTTCTTGTCAGGATTCGATCAGACCAGGACAAAGAGATTGAGATTCGGTACAGTATAACAGGAGCCGGAGCAGACCAGCCTCCCAGTGATGTCTACATTATCGATCCTGTGACAGGAAAAATGTCTGTCACTAAACCTTTGGACAGAGAGGAGAGAGCCTCCTACCATCTCAGAGCCCATGCAGTGGATATTAATGGGAACCAAATGGAGCCTCCTATTGATTTGTACATTTATGTCATTGACATGAATGACAACAGACCCGAGTTTAAGAACCAGGTCTACAACGGATCAGTCGCTGAAGGGTCCAAGCCTGGCACTTCTGTAATGCAGGTAACGGCCTTTGACGCCGACGACAGCACCACGGCGAACGGGCTGGTGCACTATCGCATCCTGAGCCAGACGCCACACATCCCCATTCCTAACATGTTTACTATTAACGGAGCCACAGGAGAGATCAGCACCATCGCTGCAGGCATCGACAGAGAGAAAGTGTCTCAGTACACCGTCATAGTGCAGGCCACCGATATGGAGGGCAGCCTGAACTTCGGCCTGTCCAACACCGCCACGGCCCTCATTAGCATTACTGACATCAACGACAACCCTCCAGAGCTGGATGCTAAAATGTTCCTTGGAGAGGCCCCAGAGAACGCCGTGGGTGTGGTCGTGGCCAATTTGACTGTCAGAGACAAGGATCAGCCTCATACACCCAACTGGAACGCTGTCTATAGGATTACAGGAGGAGATCCAATGGGCCATTTCGCCATACGCACTGATGAGATCACCAACGACGGCAGGGTCATAGTGGTTAAGCCAGTCGACTATGAGAGGAACGGAGCCTTCATGCTGATGGTGGTGGTGTCGAACCAAGCTCACCTGGCCAGTGGGATCCCCTCCTCGCCGTCCTCCTCTGCTAGTGTTACTATCACAGTGCTGGATGTCAATGAGGCCCCCGTGTTCCCGTCCAATCCTAAAATCATCCGCTTTGAAGAGGGAGTGCCTGCTGACACCACCCTGGCTACTTTCGCTGCACTGGATCCAGACCGCTTCATCCAGCAGACTATCAGGTACTCGAAACTGTCGGATCCAGCCAACTGGCTGAAAATCAACAGGACCAACGGAAGGATCACCACCACGGCGGTGTTGGATCGTGAGTCGCCGTATATGAAGAAGAATATATATGAAGCAACCTTTTTGGCCGTGGATAACGGTTCCCCTCCTGCCACAGGAACCGGTACTCTCCAGATTTATTTGATAGATGTGAATGACAACGTGCCTGTCCTGGTTCCTCAAGAGGCTCTGGTTTGCGAGAGGTCACGACACGGCTATCCAGTCAACATCACAGCTTCGGATTTAGATTCAGAACCCAATGCCGGCCCATATGTCTTTGAGTTGCCCTCTTACCCCTCTTCTGCCCGCCGTAACTGGACCATTTCACGCCTGAATGGGAATTATGCCCAGTTGAAACTGCGGATCCCGTACCTGGAGGCAGGCATGTACAGAGTTCCCATTTTAGTTTCCGACTCCGGAAACCCTCCCCTGTCCAACACCTCCATCTTGAAGGTGAAGGTGTGTCCCTGTGATGAAAACGGAGACTGTACTGTGATCGGGGCGGTGACTGTGGCCGGGCTGGGAACTGGAGCTATCATCACCATCCTCATCTGTATCATTATACTGCTCAGTATGGTTCTGTTCTTTGTGGTGTGGGTGAAACGAAGGGAGAAGGAGCGTCAGACAAAACCCTTATTGATCGACCCTGAGGATGACGTCAGAGATAATATTCTGAAGTATGATGAAGAGGGAGGAGGAGAGGAAGATCAGGACTATGACCTGAGTCAGCTGCAGCAGCCCGAGTCTCTAGATCACATAATGAGCAAGCCGGCAGGTGTGCGGAGAGTGGACGAAAGACCCGTTATCCTAGAATCTCAGTACCCTGTTCGGCCAACGGTACCACACCCAGGGGACATCGGGGAGTTCATCATTGACGGTCTGCGCGCGGCAGATAATGACCCCACCGCTCCTCCCTACGACTCCCTGCTGGTGTTTGACTACGAGGGCAGCGGCTCTACAGCGGGCTCCGTTAGCTCCCTGGACTCCTCCAGCTCTGGGGAACAGGACTACGACTACCTCAATGACTGGGGTCCTCGCTTCAAAAAGCTGGCGGACCTCTACGGAGGAGGGGGAGAGGAC

Function

symbol description
cdh4 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within cranial nerve development; regulation of eye photoreceptor cell development; and sensory system development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Is expressed in nervous system. Orthologous to human CDH4 (cadherin 4).

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_03239666_03330001.mRNA False 2652 mRNA 0.52 14 3239666 3330001

Neighbor

gene id symbol gene type direction distance location
CI01000058_03154548_03160071 NA coding downstream 79595 3154539 ~ 3160071 (-)
CI01000058_03136045_03137264 PRELP coding downstream 102402 3135699 ~ 3137264 (-)
CI01000058_03128328_03131680 NA coding downstream 107804 3128275 ~ 3131862 (-)
CI01000058_03112748_03117231 IL10 coding downstream 122435 3112232 ~ 3117231 (-)
CI01000058_02863488_02874502 NA coding downstream 365006 2863257 ~ 2874660 (-)
CI01000058_03668662_03671701 FEZF2 coding upstream 338545 3668546 ~ 3672185 (-)
CI01000058_03684461_03827727 CADPS, CADPSA coding upstream 354460 3684461 ~ 3827727 (-)
CI01000058_03904018_03906800 THOC7 coding upstream 573896 3903897 ~ 3908108 (-)
CI01000058_03950901_03956376 PSMD6 coding upstream 620900 3950901 ~ 3956376 (-)
CI01000058_03977379_03991942 PRICKLE2, PRICKLE2B coding upstream 646863 3976864 ~ 3991942 (-)
G249560 NA non-coding downstream 8612 3230557 ~ 3231054 (-)
G249573 NA non-coding downstream 39811 3199639 ~ 3199855 (-)
G249567 NA non-coding downstream 44926 3194082 ~ 3194740 (-)
G249512 NA non-coding downstream 58687 3178604 ~ 3180979 (-)
G249549 NA non-coding downstream 76839 3162614 ~ 3162827 (-)
G250242 NA non-coding upstream 240208 3570209 ~ 3570424 (-)
G250250 NA non-coding upstream 275272 3605273 ~ 3605484 (-)
G250251 NA non-coding upstream 277611 3607612 ~ 3607834 (-)
G250257 NA non-coding upstream 306812 3636813 ~ 3637097 (-)
G250225 NA non-coding upstream 309172 3639173 ~ 3639906 (-)
CI01000058_02859435_02860658 FAM72A other downstream 378473 2858483 ~ 2861491 (-)
G247592 NA other downstream 2584717 646443 ~ 654949 (-)
G250230 NA other upstream 358642 3688643 ~ 3696711 (-)

Expression


Co-expression Network