CI01000058_03904018_03906800 (THOC7)


Basic Information

Item Value
gene id CI01000058_03904018_03906800
gene name THOC7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3903897 ~ 3908108 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_03904018_03906800.mRNA
AGATCCACATGCAGCCGACACAACTTTAAAATAACTTTGGCAATCTAATAATGAGGATAAAAATCTTTGCTGTTTATGGATTTGCTGTAATGAATCCTTTGAGTCGGATCTTTTCAATGAATAAGTTGAACCGGTTCACAAAACCGATCGAACCGACTCGTTGAACCGAGAACAGTTTCAATTCGTAATGAGTCAAGAACCCAAGAATGACCGAGATAATAAGAGCATATTAAAACATAAAAAAAACTGTTTCAACCAAGAAATGTGGATAAATTGTGCTATTTCATAAGGAAAATGTGTATTTTATTTATGCACTTATATAATTTAAAGTATAAAGACCTACTTAATACTGTGGGGAAATTATATGTTGATTACATTACATTGTGTTTTCTATTATCTGTAGTACTGTAATATTTTAATCAAATAGGGCCTATATTTTTTTTTAAAATATATTTTCATATATTAAATTCAAAGTTTAAAAAAAATGATATTTATATTTTATAGCTGTTATTTGTTTTGTTCATTTTATTTAGTAGTAAGTTATTTAAAGTAAAATGTATTTATTTTAATTAGTTTATTATTTAATCGAATGTACTAGTTTATTTAGGTAATTAGTTTAATCTTTTTAGCATTTATTTAGCATTTATTTATGGTGCATTATGATGCATAAGATCATATTTCTTAATGTAGATGCATGTTTTATTCATGTTTAAGGACTTTCATATTAGCCTATGTAAATGAATTTATGTTTTTTTTTATTAGCTGAATCATGGCTACAACAAACTGAACTAACGTTAGGGGGTAAAGACTTGCTGATAAGCTGTTTTTGTAAACGGTTGTACTATGTCTTAACATAAATGCATGTTATATTTATATTCTAAATGACTTAATGTTTTTATAAGCTAAATCATGGCTACAACAAACTGAACTGACGTTATGGCGTAAAAGAATTTCTGAATCTTTTTTTTAAATGTTCTTTCAAACGAACTGTTCTAATGAACCGATTCGCGGAAACGAGTCGGACCTCCCACCACCGTCAAAAACTACTGAACTGCTTACCGAAACAGCATTTCTAAAAGTCATACGAATCGTTGAAACGTTTGAAAGAGTAATTTACGCACAACTCTGAAATGACTCAATAACGATGAAACAAAACCTTGCAATATAGGGAATTGCTATGATACGCGCTGTGGGGTCGTCGGGTTCGGCTCATTTGCTTCGCAACAGAGGCGGGGCGCTGATGCCTTGTGTCTGCGCGCGCGTCTGTCAATAAAGTTTTTTCGAATAGCTCAGTTAGCCTATTGGAGAATGGGTAGCATCACTGATGATGAGGTAATTCGGAAGCGTCTTCTGATCGATGGAGATGGAGCTGGAGATGATAGGCGCATTAATGTGCTCATGAAGAGCTTCACCAAATGGTGCCACTCCAATTTCTCACCAGAGGAAGGGTTCTCACAGTATCAGAGGATGTTGACATCTTTGGCTCAATGTGAGTTCTCCATGGGGAAGACCCTGCTCGTGTACAACATGAACCTAAAAGAAATGGAAAATTATGAAGCAATCTATTCAGATATTGAAACAAGTATAACATCAGCCCATGAAAAAATTGCAGAGTGCAAAAAGGAAATCCAGAGAGCGAAAAGGATACGGAAAAACCGCCAAGAGTATGATGCTTTGGCCAGAGTTATCAAGCAACATCCAGACAGACATGAGACCTTAAAGCAGCTTGAGGCTTTAGACAAAGAGCTTCAGCAGCTTTCACACATCAAAGAGAATGTGGACGACAAGGAACTTCAACAGACTTTGGAGAATGATGAGAAGATGGAAAGCGATGATACCCAGGAGAGTCTGATGGAAAATGGAGACTAGACATTTGTATTTTTCCAGTTTTTCTGAGGATGTTCCTGTTATTATTATTATTTCATGAGCACCAGAAGATGTTTTTTCATTTTAGTCTCTCTTTTTTTTGTTGGTCATGTACAGAATTAAA

Function

symbol description
thoc7 Predicted to enable RNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to act upstream of or within RNA splicing; mRNA processing; and mRNA transport. Predicted to be located in cytoplasm and nucleus. Predicted to be part of THO complex part of transcription export complex. Orthologous to human THOC7 (THO complex 7).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K13176 THOC7; THO complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_03904018_03906800.mRNA True 1990 mRNA 0.35 8 3903897 3908108

Neighbor

gene id symbol gene type direction distance location
CI01000058_03684461_03827727 CADPS, CADPSA coding downstream 76170 3684461 ~ 3827727 (-)
CI01000058_03668662_03671701 FEZF2 coding downstream 231712 3668546 ~ 3672185 (-)
CI01000058_03239666_03330001 CDH4 coding downstream 573896 3239666 ~ 3330003 (-)
CI01000058_03154548_03160071 NA coding downstream 743826 3154539 ~ 3160071 (-)
CI01000058_03136045_03137264 PRELP coding downstream 766633 3135699 ~ 3137264 (-)
CI01000058_03950901_03956376 PSMD6 coding upstream 42793 3950901 ~ 3956376 (-)
CI01000058_03977379_03991942 PRICKLE2, PRICKLE2B coding upstream 68756 3976864 ~ 3991942 (-)
CI01000058_04100253_04135812 ADAMTS9 coding upstream 191605 4099713 ~ 4136508 (-)
CI01000058_04178879_04179912 NA coding upstream 270179 4178287 ~ 4181797 (-)
CI01000058_04183820_04207647 MAGI1B, MAGI1 coding upstream 275498 4183606 ~ 4207692 (-)
G250223 NA non-coding downstream 5335 3852442 ~ 3898562 (-)
G250238 NA non-coding downstream 24346 3794644 ~ 3879551 (-)
G250227 NA non-coding downstream 52568 3839079 ~ 3851329 (-)
G250231 NA non-coding downstream 64965 3835057 ~ 3838932 (-)
G250395 NA non-coding upstream 259704 4167812 ~ 4168126 (-)
G250326 NA non-coding upstream 400049 4308157 ~ 4310100 (-)
G250409 NA non-coding upstream 428752 4336860 ~ 4337089 (-)
G250410 NA non-coding upstream 434402 4342510 ~ 4342853 (-)
G250308 NA non-coding upstream 438621 4346729 ~ 4348920 (-)
G250230 NA other downstream 207186 3688643 ~ 3696711 (-)
CI01000058_02859435_02860658 FAM72A other downstream 1042704 2858483 ~ 2861491 (-)
G247592 NA other downstream 3248948 646443 ~ 654949 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003400 thoc7 coding NC_007122.7 CM002895.2 19603251 ~ 19611356 (+)