CI01000058_03950901_03956376 (PSMD6)


Basic Information

Item Value
gene id CI01000058_03950901_03956376
gene name PSMD6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3950901 ~ 3956376 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_03950901_03956376.mRNA
ATGCCATTGGAAAACCTGGAGGAAGAGGGTTTACCTAAAAACCCCAATCTGAGAATAGCTCAGCTGAAGTTTTTATTGACTCACAGACAGGATGCTAAAGTGAAGAGCGAGCTGATGGACGCCATCAAACTCAACAATATGGCCCCATACTATGAAGCTCTGTGTAAAGAGCTGAAATGGCCGGCTGACACGGATCTGTTGAGTAAGATGAAGAAAGCAAATGAGGACGAACTGAAACGGCTGGATGATGTTTTGGAAGATGCTGAGAAGAACCTCGGAGAGAGTGAGATCAGGGATGCCATGATGGCCAAAGCTGAATATCTCATACGCATCGGTGACAAGGAAGGGGCCCTGACTGCCTTCAGGAAGACCTATGACAAGACTGTTGCGCTTGGTCATCGCTTAGATATCGTTTTTTACCTGCTGAGGATCGGCCTGTTTTATATGGACAACGACCTCATCACCCGCAACACTGAGAAAGCCAAAAGTTTGATTGAAGAAGGTGGTGACTGGGACCGGAGGAATCGTCTGAAGGTGTATCAGGGCCTTTACTGTGTGGCCATTCGGGATTTCAAGCAGGCAGCAGAGCTCTTTCTGGACACCGTCTCCACATTTACCTCGTATGAGCTTATGGACTACAAGACATTTGTCACATACACCGTGTATGTGTGTATGATTGCACTGAAGAGGCCCGACCTGAGAGAGAAGGTGATTAAAGGTGCTGAGATCTTGGAGGTGTTGCACAGTTTACCTGCTGTCCGTCAGTACCTCTTCTCTCTCTACGAGTGCCGTTATTCTGTATTCTTCCAATCACTGGCTCGAGTGGAACAGGAGATGAAGCAAGACTGGTTGTTTGCTCCTCATTACCGTTACTATGTTCGAGAGATGCGCATCCTGGCCTACAGCCAGTTACTGGAATCCTACCGCTCCCTCACGCTGGGATACATGGCCGAAGCGTTTGGAGTCAGCACAGAGTTCATCGACCAGGAGCTGTCACGATTTATCGCTGCTGGCCGCTTACATTGCAAGATCGACAAAGTCAATGAGATTGTGGAAACCAATAG

Function

symbol description
psmd6 Predicted to enable enzyme regulator activity. Acts upstream of or within lens fiber cell differentiation and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle. Is expressed in ciliary marginal zone; head; and lens epithelium. Orthologous to human PSMD6 (proteasome 26S subunit, non-ATPase 6).

GO:

id name namespace
GO:0022624 proteasome accessory complex cellular_component

KEGG:

id description
K03037 PSMD6, RPN7; 26S proteasome regulatory subunit N7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_03950901_03956376.mRNA True 1064 mRNA 0.48 7 3950901 3956376

Neighbor

gene id symbol gene type direction distance location
CI01000058_03904018_03906800 THOC7 coding downstream 42793 3903897 ~ 3908108 (-)
CI01000058_03684461_03827727 CADPS, CADPSA coding downstream 123174 3684461 ~ 3827727 (-)
CI01000058_03668662_03671701 FEZF2 coding downstream 278716 3668546 ~ 3672185 (-)
CI01000058_03239666_03330001 CDH4 coding downstream 620900 3239666 ~ 3330003 (-)
CI01000058_03154548_03160071 NA coding downstream 790830 3154539 ~ 3160071 (-)
CI01000058_03977379_03991942 PRICKLE2, PRICKLE2B coding upstream 20488 3976864 ~ 3991942 (-)
CI01000058_04100253_04135812 ADAMTS9 coding upstream 143337 4099713 ~ 4136508 (-)
CI01000058_04178879_04179912 NA coding upstream 221911 4178287 ~ 4181797 (-)
CI01000058_04183820_04207647 MAGI1B, MAGI1 coding upstream 227230 4183606 ~ 4207692 (-)
CI01000058_04211165_04255297 NA coding upstream 254503 4210879 ~ 4255536 (-)
G250223 NA non-coding downstream 52339 3852442 ~ 3898562 (-)
G250238 NA non-coding downstream 71350 3794644 ~ 3879551 (-)
G250227 NA non-coding downstream 99572 3839079 ~ 3851329 (-)
G250231 NA non-coding downstream 111969 3835057 ~ 3838932 (-)
G250395 NA non-coding upstream 211436 4167812 ~ 4168126 (-)
G250326 NA non-coding upstream 351781 4308157 ~ 4310100 (-)
G250409 NA non-coding upstream 380484 4336860 ~ 4337089 (-)
G250410 NA non-coding upstream 386134 4342510 ~ 4342853 (-)
G250308 NA non-coding upstream 390353 4346729 ~ 4348920 (-)
G250230 NA other downstream 254190 3688643 ~ 3696711 (-)
CI01000058_02859435_02860658 FAM72A other downstream 1089708 2858483 ~ 2861491 (-)
G247592 NA other downstream 3295952 646443 ~ 654949 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003399 psmd6 coding NC_007122.7 CM002895.2 19502297 ~ 19511548 (+)