CI01000058_04178879_04179912


Basic Information

Item Value
gene id CI01000058_04178879_04179912
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4178287 ~ 4181797 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_04178879_04179912.mRNA
AGATGAGTATCATCATCATCTGCATCAACACTAAACTAAAACTATTAAATTGTTGCTTGAACACATTCAAACAGAATTACCAAGTACGTTAACATGCACATTTACAACAGTATAGCCGAGCTCCAGTCATTCGGACTCTGTGCCCCTCATACACTACATGATTTTCTGTGGAATCTGTGAAGTCTGACTGACCGAAATACGCAGACTGGCTCTGACTTGCGGTGTTGCCTCCAATCAGGGCGAAAATCATGTAGTGTATTCCAGCCTTGATTATTGTTTTAGTTCAACTGAAATCAAACTTTTAAGGTGCATTTAAACATACTTAAAGTTTTAGTTCACCCAAAAATAATTCTGTCATTAATTACTCACCCTCATGTCATTCCACACCCGTAAGACCTTCGTTCATCTTCAGAACACAAATTATCCAAGAGCTCTGACTCCTCAACAGACAACAATTTAACCACCTATTTCAAGTAGGGCTGGGATAAAAATTGTTGCAATAAATCGAGAAATGATTCTGGATCGATTCTGAGATTTTCCGAATGCATTGCGATTCTCTTGAAGCTATTCTGAGCTTGATTTGTAACAGCAGATGGCGCTCAAGGCTAGTTTTTAACCGTACACTCAAATGGTCATGAAGAAGACCACTCGTGCATTCGGCTGAGTCTGAGAATGTACTTGCACATCAGAATGCTTTTATGACGTGAGATTAATGTAAACAGGCCACTGCAAACACCCTTCATAACTCACTTCAACCTTTTCGAACTTTATGTATGATTATTTTATAGAAGGGATTATTTTATAGGCCGTTTCTAAAGCACGCAGAGAAAGCCCAGAATCGATTTGAGAGAGAATCGTGATGCATTCGGAAAATCTCAGAATTCATCCAAAATCATTTCTCGATGTATTGCAATGCTTTGTCCCAGCCCTACTTTCAAGGTCCCGAAAGGTACTAAAGAAATCGTTAAAATAGTCCATGTGATTGCAGTGGGTCGACCTTCATTTTATGAAGTGACAAGAATACATTTTGTGCTCAAAAACAAAACAAAAATGATGATTTTATTCAACAATATCTTCTCTTCTGTGTCATACACTGTTTACATCCAGTGCTTCCAGGTTTTATGTCAGAACGCGAGTCATTATTGGCCGGCTCCTGCGCCAGCATCGCATGCATGCATCGTGCTGCTCGCGTGAAAAGCGTCGGCCAATACTGAGCCGGCGTTCTGATGTGGAACCCAGAAGCGCTGGACTTAAACAGCGTAGGAGAATGTCACAGAAGAGAAGATATTGTTGAATAAAGTCATTATTTTTGTTTTGTTTTTGGGCACAAAAAGTATTCTCGTCGCTTCTTAAAATTAAGGTTAATCCACTGCAGTCACATGGACCATTTTAACGATGTCTTTAGTACCTTTCTGGACCTTGACAGTGGTGGTTAAATTGCTGTCTATGGATGAGTCATATATCTCTCGGATTTCATCAAAAATATCTTAGTGTTCCGAAGATGAACGAAGGTCTTACGGTTGTGGAATGACATGAGGGTGAGTAATTAATGACAGAATTTTCTTGTTTGGGTGAACTAACCCTTTAATGGGGGCACTGTTGTCTAGTCATGGTAACAGCCAAACCAATATCAGCTTTTCATGGAAATATAGTAAGGTTAAAGACACATTCACAATCCATCACATAACATGATACTTGTTCAGGCAGTAAATGATAACTGAGTTCACCCATAATTACTCATATCTTACAGACGGCATCAACGACGGCAACGGCCTCGGCGCCGGTGCACAAACTGTTTCGGAAGTGAACGCAGCTCCTCCCGAAAGTCGGCCCCACCCACCATCGGAGTCCAGCTATCCACCAGACCTTCACAAATCATCACAAAATGACGACAGGAGGGGGCGGGAGCCGGGCCAACGGGAGCACGGCCACCGGTCAAACCACCGTCACAACAACCACAGACACCGCTCCCCTGAAAAGAAAAGCAGGAGCAAGGGTCACGGAAAGGACAGCGGAACTTCAAAGCCTCACAAGAGGAAGGGCGACAAGAAGAGATAAACCCTACAACGACGAGTTCGACAGGGTGGTGGATGAGACCTTAAAGGAACCTCCTCCTCCGAAGCCTCCATCCCGCTCCGAGAGCATTCCACTTTTGGCAGCATCCCTGGACCGGCTCAGTCTGGATAACACCCTACAGAGAGAGCCTCCCAGCTACCTTGATGCCTATCGTGATTCGACCCTTCTCCGCGGGGCTTCTCGTGACGGCACCTTTCCCCGCGTTCGGACACCTGACTCGGATTCGGCTTTCCGGAACTACAACTCTTTATTGAGGGGCCGCTCCCCTGTGAGAACTGGAGGCAGACAGGATGGATACCGTAGAGACGAGTCTCCGGTTTCATACTCGTACCGGACGAGGAGTCTAAGTCGAGACTTGTCTCCCATCAGAGGGTACCGCGATGAGGAGGAAGAGGAGGTGGGATCCCAGCTGAGTGGGTATTATAGCACGCTCAGATCCAATTACGGTAGATCTAACAACAACGTACCTGAGCCGAGGAGGAAGGCCTACAAAGAGAGCTCCAAAGACCTCAGCATCTGATGGGTCGACTAGGAAGGACACCACACCCAGAGCCCACTGTCCACACGAGCCTTCATCCAAGGACTGCGCAGACCCTGGATACTAAATTATTGATTTGAAAACTGGTGTTTTCTCATGGTTGAACATCTTTACAACTCTCAACAGCAGAAGAATGATTTCTTTTCTTTCCATCGAAGTGTCATTTGGTTTCTTTTATGACCCTTTTTATAAATCTGCTAGCAGTTCTACAGAGTTTGACAACTATGTATAAAGAAAACGATTATGTGCCTAACAGTACCATTCTTGGTGTTTTCTTTTGTTTTGTTTTACAAAGGACAGCCTTTTGGATTATGAAACCTTCTGTTACAGAGAGCCCTCTCATGCACCGAGCAGCTCAGTCAATGTGGTGCTCAGACATATACTGTGCATGTCTTTACACTTTCAATGTCTTTTCTCTCTTTTATTTTCTTTCTCTTCCCCAGTGCCACTGTTTTTTAGACATTTGACCAGAGTATAGCACAAGCCTGCATTCGTTTGTATATTTTTGACAGTTTGCAGTATGTGTACATTCAGAGGTGATCATTTTAAAAGAATGAAGGGATAATGAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_04178879_04179912.mRNA True 3188 mRNA 0.44 2 4178287 4181797

Neighbor

gene id symbol gene type direction distance location
CI01000058_04100253_04135812 ADAMTS9 coding downstream 41779 4099713 ~ 4136508 (-)
CI01000058_03977379_03991942 PRICKLE2, PRICKLE2B coding downstream 186345 3976864 ~ 3991942 (-)
CI01000058_03950901_03956376 PSMD6 coding downstream 221911 3950901 ~ 3956376 (-)
CI01000058_03904018_03906800 THOC7 coding downstream 270179 3903897 ~ 3908108 (-)
CI01000058_03684461_03827727 CADPS, CADPSA coding downstream 350560 3684461 ~ 3827727 (-)
CI01000058_04183820_04207647 MAGI1B, MAGI1 coding upstream 1809 4183606 ~ 4207692 (-)
CI01000058_04211165_04255297 NA coding upstream 29082 4210879 ~ 4255536 (-)
CI01000058_04276892_04277098 NA coding upstream 94804 4276601 ~ 4277545 (-)
CI01000058_04321968_04325974 NA coding upstream 138684 4320481 ~ 4326404 (-)
CI01000058_04412049_04428358 NCOA3 coding upstream 229936 4411733 ~ 4429252 (-)
G250395 NA non-coding downstream 10161 4167812 ~ 4168126 (-)
G250223 NA non-coding downstream 279725 3852442 ~ 3898562 (-)
G250238 NA non-coding downstream 298736 3794644 ~ 3879551 (-)
G250227 NA non-coding downstream 326958 3839079 ~ 3851329 (-)
G250231 NA non-coding downstream 339355 3835057 ~ 3838932 (-)
G250326 NA non-coding upstream 126360 4308157 ~ 4310100 (-)
G250409 NA non-coding upstream 155063 4336860 ~ 4337089 (-)
G250410 NA non-coding upstream 160713 4342510 ~ 4342853 (-)
G250308 NA non-coding upstream 164932 4346729 ~ 4348920 (-)
G250299 NA non-coding upstream 226057 4407854 ~ 4408916 (-)
G250230 NA other downstream 481576 3688643 ~ 3696711 (-)
CI01000058_02859435_02860658 FAM72A other downstream 1317094 2858483 ~ 2861491 (-)
G247592 NA other downstream 3523338 646443 ~ 654949 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004093 NA non-coding NC_007122.7 CM002895.2 19088414 ~ 19091101 (-)