CI01000058_04656762_04675421 (SFMBT1)


Basic Information

Item Value
gene id CI01000058_04656762_04675421
gene name SFMBT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4656316 ~ 4676097 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_04656762_04675421.mRNA
CTATATATACAGGTATGTTTCCTTGCTTTATTAGAGATTTTACTGTGCTGTTTAGGTGACATTAGCAAATCTTTTTCATTTCGCAATGCTATATTGGGAATTGTGGTGCATTTTTGCTTCTCAAAGTTGATGCGGGGAGTCTGGGCGACAGAAGTGGCTTTTATCTTTGCAGCTACGCACTAAGGATTCCTCCTCCCACTTACTTAAATGAACTAGGCTGTGTGAAATGTGGCTTGTGCAAGTCTCCTCATGTTTCTGTCTTGTCATTCGCATACAGTTTCTCTCACACACGCAAATACTTTTATAGAAACGCATTTATATTAATTGTAATTCTAATATCATAATTTATCTCTTTGTTTCAATGTTTGTTTTTCTCTCATTTGTTTTTTTCCCCCTCCTTATTATTCATGTAGAAGCAGTTTGATTGTCCTCCGGGGGCTTCAGACATGAGCCTTGAGGTGCTGGAGTCTGATGCAGACTCTGGCCAGGATGTGTCAGAGTTTAACTGGGATGACTACCTGGAGGAAACCGGGGCACTTTCTGTTCCTCATCATGCGTTCAAACACGTGGACCAGGGCCTGGAGACGGGTCTGACTCCTGGTATGAAGCTGGAGGTGTGTGTCCGTACGGAATCAGAAACCGCGTACTGGGTGGCCACAATAATCACCACCTGCGGACAGCTGCTGTTGCTTCGATATGAGGGTTACCAGGATGACCGGCGTGCCGACTTTTGGTGCGACATCATGACCGCCGACCTGCACCCAATCGGATGGAGCAAGCAGCAGGGTCGACCAATGAAACCTCCTGAGGGTGTCCGAGAGAAGCACCAGGACTGGGAAGCGTTGCTGGAGAAAGCTCTGGCTGAATCCTGCAGTGTACCTGCTAGTCTGCTGGAAGGGGCCCAGCGTGGCTGTAATCCTATAGATCTGTTAAGTCCAGGTCTAAACGTTGAGCTAGTGGACCGTCAAGATGCTGGGGTGGTCTGGTCTGCAGTGATTGAGGAGAACGTAGGGGGCCGCTTGCGGCTTCGATATGCCGGCACAGACGGGCTCCCTGACACCCAATCCATCACATGGGTCTTCTACCTGGACCCCTTGCTTCATCTACCGGGCTGGGCACAGGAGCACAGCTGCACTCTCAGACCACCTGCAGCTCTGCTCCCCCTGCGCACTGAAGCTGAATGGGAAGATGTGAAGAAGACAGTCTTCTCTCAGGTGCAGGACTCCAACATCAGCGAGGAGTTTTACAGGGACAGATCAGCCATCACTCCGCACTGCTTTACTGATGGAATGAAGCTGGAAGCTGTGGACCCATTAACTCCTTTCACCATCAGCCCTGCCACTGTGGCGAAGGTATTTAATGATAAGTTCTTTCTGGTGCGGATGGACGATATGAGAGATGAGGCACAGAAAGAGGGAGGTGGACGCTCTTTCCTGTGTCACAGGGACAGTCCGGGAATCTTTCCGACGCAGTGGAGTCTAAAGAATGGAGTCAAGCTCAGCCCTCCTCCAGGATTCCAAGGTCAGGACTTTGACTGGGCGGACTATCTAAAGCAGTGTGAGGCTGAGGCAGCCCCTCAGCAATGCTTTCCTCCAGACCCGTCTGACCAGTGCATTAAAGAGTCCATGATGCTGGAGGCCGTCAACCCGCTCTGCCCTGAAAACATTCACGTAGCAACTGTTACCAAGGTCAAAGGTCAACACATGTGGATTCGTTTGGAAGGTCTGAAGCAAGCCATCCCAGAGATTATAGTTTACACAGACTCCATGGATATTTTCCCAGTGAGCTGGTGTGAAACAAATGGCTATCCTCTTCAGCACCCTTGCAAGCCCAGAGTGGAGAAACAGAAAAAGGTTGCGGTTGTTCAGCCAGAGAAACACCGGGTACCATCCAAAGACTCCTCACCTGATACTACCAAACAACTGAATAACAGCAGTCAGGCTGAGATTGCAGGCCAGGCGAATGGGAAGTACTGCTGCCCTAAGATCTATTTTAACCATCGCTGCTTCTCAGGGCCCTACCTCAATAAGGGCCGTATTGCAGAGCTGCCCCAGTGTGTGGGACCTGGGAACTGTGTCCTGGTACTAAAGGAGGTGTTGACACTGCTGATAAATTCTGCCTACAAGCCCAGCCGAGTGCTGAGAGAATTGCAGCTAGACCAAGAGGGCCGCTGGCAGGGTCATGGAGAGACACTTAAAGCCAAGTACAAAGGGAAGAGCTACAGAGCAACAGTAGAGATCGTTCGCACAGCAGACCAGGTGGCCGATTTCTGTCGGAAAACCTGCATCAAGCTGGAGTGTTGTCCCAACCTGTTCGGCCCACGAATGGTTCTGGAGCGCTGCTCAGAAAACTGCTCTGTGCTCACCAAAACCAAATACACATATTACTATGGGAAGAAGAAGAGCAGGCGTGTGGGTCGACCTCCCGGCGGACACTCCAACTTAGAGGGCGGTGTGAAGAGACGAGGCCGGAGGAGGAAGAGGAGGAAGCAGCTCTTCGTCCACAAAAAGAGACGTTCTTCTGCTTCAGTCGACAACACTCCGGCAGGTTCCCCTCAGGGCAGTGGTGATGAGGAGGATCTGGATGAGGATGACTCTCTGAGTGAAGATACAGGATCTGAGCTGCAAGACGAGCTGATGGATGACTCCGAATACTCAGAGAAGAAGTCGCAGCCGCCCACTCCCTCCCCCTCCCCTCCAGAAACCCCCCGTCCCACACGCAGACGGCGCAAAGCTCGCTCACCTTCCTGCTCGGATGATGAGAACAGACCTCCTTCACCCAAGAGTCCACGTACAGAGGTTCCTCCGAAGCTGTGTTTGGACAGCAGTCCACTGGAATGGAGTGTCACAGATGTTGTGCGTTTCATCAGGACCACTGATTGTGCTCCGCTGGCACGCATCTTCATGGATCAAGAAATTGACGGTCAGGCGCTGCTTCTGTTGAATCTTCCCACTGTACAGGAGTGTATGGACCTGAAGCTCGGCCCTGCCATCAAGCTGTGCCATCACATCGAGCGGGTCAAGCTGGCATTTTACCAACAGTTTGCCAGCTGAGGATGACCGTCCATAGAAAAGAGTAGGGCATTTGACATTTTAGGTGACTTTCCTAATGTTTGTGATCTTCCTTTTGCTCTATGGATCATAGAACCTTTAAAATCACTTAGCGCTTTAGACGCCTCCTGATCCATTAGTTCTTCAGCAGGCGCAGTCGAGATTAACTACTGGAGGGGCGTTTTTCAACAGGGTCAATCTGGTACTTTTACAGCTGGGCTCTCCATCTCAGATCAAGCCTGGACTAGTGTTTAGTTTGTGATCTTTTTCACTTTTTAAAAGATTAGTACAACCTGGGTTCAGCCAGTGTTAAACCTGGGTTGGAAGAACTGTGTCTGCAACAGTAAGCAAAGCTCTTCACCTGTTTCTAAAACCTTTATTAACTGTAGAGCGGATGACAATGCAATTACCTTAAGCACAAAAAAAAAATTGCCCATGTACTGTAAGTGTATGCAAACTTGTACATACAGGAGCGTGAATGTAAATACTGTAAATAACCAGATGTTAATTTTAGTGGGACTGCTTTAATGTTCCCATTTCGGTTTGGTTTTCTATAACAGCTTGGGAATTACACTGTAACACAACAGTGCAAAAGATGAGGCATGATATGCCTGATGCTGCCATTTTGGTTTCTGTAAATACTAATAAGCATTTGCTCATCCTCACGATGCATTATTAA

Function

symbol description
sfmbt1 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SFMBT1 (Scm like with four mbt domains 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_04656762_04675421.mRNA True 3729 mRNA 0.49 20 4656316 4676097

Neighbor

gene id symbol gene type direction distance location
CI01000058_04637318_04650366 PRKCDB, PRKCD, PRKCDA coding upstream 5810 4637218 ~ 4650506 (+)
CI01000058_04584028_04613429 FGD5A coding upstream 42569 4584028 ~ 4613747 (+)
CI01000058_04556260_04565696 FGD5A coding upstream 90308 4556157 ~ 4566008 (+)
CI01000058_04466648_04523385 ZMYND8 coding upstream 132833 4466196 ~ 4523483 (+)
CI01000058_04405407_04408449 ID1 coding upstream 246921 4405407 ~ 4409395 (+)
CI01000058_04678629_04687645 TMEM110 coding downstream 2005 4678102 ~ 4689520 (+)
CI01000058_04748480_04757498 QRICH1 coding downstream 72327 4748424 ~ 4757638 (+)
CI01000058_04769469_04774262 TWF2B, TWF2 coding downstream 93372 4769469 ~ 4774485 (+)
CI01000058_04777182_04780095 NA coding downstream 100445 4776542 ~ 4780376 (+)
CI01000058_04782847_04791049 UBA3 coding downstream 106750 4782847 ~ 4791555 (+)
G250035 NA non-coding upstream 114073 4541999 ~ 4542243 (+)
G250013 NA non-coding upstream 203745 4451527 ~ 4452571 (+)
G249979 NA non-coding upstream 235524 4420348 ~ 4420792 (+)
G249980 NA non-coding upstream 238052 4417925 ~ 4418264 (+)
G249981 NA non-coding upstream 242679 4363707 ~ 4413637 (+)
G250049 NA non-coding downstream 816 4676913 ~ 4677151 (+)
G250075 NA non-coding downstream 51712 4727809 ~ 4738445 (+)
G250098 NA non-coding downstream 207908 4884005 ~ 4884279 (+)
G250095 NA non-coding downstream 208365 4884462 ~ 4885100 (+)
CI01000058_01794468_01800421 KISS1 other upstream 2858584 1794468 ~ 1800421 (+)
G247940 NA other upstream 3199869 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 3368046 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 4059145 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 4200572 434913 ~ 455744 (+)
G250039 NA other downstream 18311 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 150279 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004085 SFMBT1 coding NC_007122.7 CM002895.2 18283948 ~ 18323059 (-)