CI01000058_04678629_04687645 (TMEM110)


Basic Information

Item Value
gene id CI01000058_04678629_04687645
gene name TMEM110
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4678102 ~ 4689520 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_04678629_04687645.mRNA
CTATAAAAAAAAACAGAACTACCCAATCAGCCGCTTATTATTTTGCATTTCTAAACGAGTTATAACGGCAAGCGAAGTTTTAAACGCCTTATTTCTTGACTTAATTTAGCCGTAACCGTTTGACTGCTTTAATTTAACCGTAAAGCCACACTATTGTAGTCTGGCAGCCAACTGCACGCGCTCTAAATAATCTAACCGATAAATGTCTCCATGACAACGTGTGTGTTGTAGCTTTGAGCATCAATGTTACACATCTGAGTATGTAACATGTTTACTCCGTGCTAAAGAGGATGTTTATACATCACAACCTGCTGACAGATAGTAGGTAGCTCACAGCTGGATGGCGACGCATCGAGGTCCAGTATGAAACACGATACATCTGCGCTTCACTAACCGTGACTGGAGGCTCATAAGAGAGCCTTCATTATGTGCGATAGCTGTGTCATCGTCCTGTCGATCACCTCCACTACCCGAGACTGAGATTTAGTGGCTCTTTTAAACACTCGTGATCTAGTTAGTGTTGCGCAATGGCGGGTGTTGGGGTCAGTGTGCTTTCGCCGGGTCAGCTGCCGTCTGCATCCTCCAACTCCTCACCCACTGATCCTAATGCCCGGGGTTGCTCCAGCGGGGACTTCATGGACACCTTCGGCATCTTCCTGCAGGGCCTGCTGGGAGTGGTGGCCTTTAGTACCCTTATGTTGAAACGCTTCAGGGAGCCCAAGCACGAACGGAGACCCTGGAGAATTTGGTTTCTGGACACCTCCAAACAGGCCATAGGGATGCTGTTTATTCACTTTGCCAATGTCTACCTGTCTGACCTCACAGAGGAGGACCCATGTTCACTATATCTAATCAACTTCCTGTTGGATGCAACACTGGGCATGCTGGTGATCTATGGCGGCGTGAAGGCGGTTAGCGCTGTGGTTGAATGGAGACAGTGGGATTCGCTGCGTTTTGGAGAATATGGTGAGCCGGTTCAGTGCAGCGCCTGGGCAGGTCAGTGCGCTCTCTACATCCTCATCATAATGTTTGAGAAGGTCATGATCATGCTGGTCCTCCTCATCCCACAATGGAAGAAGCTGGCTACACTCAACCCCATAACCAACCCTCATCTGGAGTTGGCTATTGTCATGCTAATCGTCCCGTTTTTCGTGAATGCTCTGATGTTCTGGGTGGTGGATAACTTCCTAATGAAGAAGGGCAGAACAAAAGCCAAGCTGGAAGCAGAAGACGACCCTCGCGGCAACAGCAAAGTGCGCTACAGACGGGCAATGTCACATGATGACTCTGAATCAGAAATCCTGTTCTCCGCAGATGACGAAATGGAGGATTCAGATGGTGACGACGATATACGAAGAATCATAGGGCTCAAGCCTGTTAAGAAAAAGAAGCACCGTCTTGGTATTCCAGTTTGAATTCAAATCGATTTGGACTTGGGGTCATGGGAACGAGGGAGGCCTCAACTCATTTACCAGAGCACAGATCAGCAAGTGAGGGGCATAATGACTAAGTCTATGAATTGTGGGGTAACGGACCCAGGCTCCAGTAAACACACACGAGAGGACCCTCCTGACATTACCAGAAAGATTTTTGCTATTCTATGCCACAGATGATTGAGGGATCAATCATCTGACCAGCCTATTGGGAGATGATCGGACCATATTTTCACTGTTTTTTTTTTGCACATTCATAATTCTGCTTAAACATCATGTGGTTCTGCAGTGGATATACAACCCAGCTACTCCTATCTCCTTGCATCTGTCTAACATTTGAACTGATAAAAAAAAAAAAAAATCAGTCTAAACCTATACAAATAACATGCTGATGTTGTTCTGCTGAGATAAGTACCTTTAACTGTATGCATGTGATTGATCACACTTGGGCGAACTGTTCAAGGTCACTCATAGTCGGTTCCTAAACGTGTTTGTAAGCGTGGCTGCAGCAGAAAGTTTTGTGCACGTCAGCTGTGAGGAAATTGTGCTGATAAATGTTACAGAAAACCATTCGTCAGCAGTGTTATGAGCTGGTATTATAATACAGTTGGTACGGTCTTGCAATGTGTGTTTTTAACCATTAGGCAGCAGCCAAATTGACAAGGTACAAAATTCCAGGGGTGGCTGTTTCATAACACTAATCTAATGGCTTGTCTTGCTGTTTGGTTTTTGAAAGAGTATCTGCCTCAATTCAGTGTGTTGCTGTGTTTTTTCTGCCATTAATGTTTTCCCTGTATTTGTTTTTTTTTTTCTCTTTTTTTTTTGTGGCCTA
>TU283776
AGGTTTTGTAACTGTCGCATTTCTATTAGACCTTAGATGATTTGTATGTTTTAAACACAGAGTACTAGAAATTTGCACAAAATAAATCACAACTGATGACAAATTAGAACATTTAAATGGAATGTATAAAACTGTCAAAACAAAAGTCTGGACAAGGGAGATCTGATACTTTTACTGCTTCTCAGATATCTTTGAATGACAGCATTCATACTTGGGGTTTTCTCTGACCTACAGTGCCAAATTCAAAATCATTCCTCTACCCATGTCTTAGATGGTACATCCCTTTTTCACATAGTATATATGCATGACCATTACATGTGTAGGACTGTTCCTCACTCTTTCCCAACACTTCAGACCTATATGTAACCATGGGAAGTGAGTAAGTTTACAATCTAATGAAGCAGTTGTGCCTTCAAGAATGGGTTACACAGACCACAAAACATCCAGTAATGAACTCTGGGAACACTTGATTTTCAAAGGAAGACAGATTACCTTGATAATTGGAGGATTAACAGAACTCAGAATGTGGTTTCCTGATATTTTCTTGCTACTAACTTTTTCAACACCTGTCAATAGTGATAGATTTGACACAAGGCAAGTCATTTGAGCAGGAAACTTGACAGTGAGAACAGCAGTCACTTTAGTGTAGCATTTCCATCCACACACCATGTAGGTGTCAAATATTATAGTCAAGTGATTGTAGTCCATCTTTCTCACTTGTAAAGGGATGAGCAGCTCAGTCAGAATGCAATTGAGAATGTTACCTATTTTACATATTCATGTTTGCAAGGAGTATTCCACTTTTTAGGATGAAATGTCATCACCTGCTTGTTTTTAAAGATGATGATTAGCTGAACTGTCTTTGTTTAGCGCTCTTCCTCTTCTGCTGGTCAGATCCTGTTCTCCGCAGATGACGAAATGGAGGATTCAGATGGTGACGACGATATACGAAGAATCATAGGGCTCAAGCCTGTTAAGAAAAAGAAGCACCGTCTTGGTATTCCAGTTTGAATTCAAATCGATTTGGACTTGGGGTCATGGGAACGAGGGAGGCCTCAACTCATTTACCAGAGCACAGATCAGCAAGTGAGGGGCATAATGACTAAGTCTATGAATTGTGGGGTAACGGACCCAGGCTCCAGTAAACACACACGAGAGGACCCTCCTGACATTACCAGAAAGATTTTTGCTATTCTATGCCACAGATGATTGAGGGATCAATCATCTGACCAGCCTATTGGGAGATGATCGGACCATATTTTCACTGTTTTTTTTTTGCACATTCATAATTCTGCTTAAACATCATGTGGTTCTGCAGTGGATATACAACCCAGCTACTCCTATCTCCTTGCATCTGTCTAACATTTGAACTGATAAAAAAAAAAAAAAATCAGTCTAAACCTATACAAATAACATGCTGATGTTGTTCTGCTGAGATAAGTACCTTTAACTGTATGCATGTGATTGATCACACTTGGGCGAACTGTTCAAGGTCACTCATAGTCGGTTCCTAAACGTGTTTGTAAGCGTGGCTGCAGCAGAAAGTTTTGTGCACGTCAGCAGTGTTATGAGCTGGTATTATAATACAGTTGGTACGGTCTTGCAATGTGTGTTTTTAACCATTAGGCAGCAGCCAAATTGACAAGGTACAAAATTCCAGGGGTGGCTGTTTCATAACACTAATCTAATGGCTTGTCTTGCTGTTTGGTTTTTGAAAGAGTATCTGCCTCAATTCAGTGTGTTGCTGTGTTTTTTCTGCCATTAATGTTTTCCCTGTATTTGTTTTTTTTTTTCTCTTTTTTTTTTGTGGCCTATTAAAGGGACAGTTCACCCAGAAATTAAAGTCATTTAATGCAATGCAAATTATATTTTGAATAATGTTGCAGTCCAAAAATGTCATTGAGTTCCATTGTATAAACGCACACAAAAAAGGTTTTTTTTTTTTTTTTTTTTTTCAAAATGTCTTGTTTCACAGAAGAGTGAAAGTCATAGAGGTTTGGAAGTAAATGAGGGTGACTAATCTATTATGATTTTCATTTTTGGGTGAAGTGTCCTTTTAAATTTTCATTTTTGCTACTTATTGCAGGGAAGGTGCTATGTTACAGGACGTAACCTCTTACACAGTTTGGTGTTGCATTGTTGTCTCTTTGTGTGCGGTATTACCTTCGTTGTTTTTTTTTTTTTTTGTCTTTAAGCATTACCCCTGCACCTCTACTTAATATTTAGCAGTTAAACGCTAAACCAGTGGGTCTTTCTTCCAAATACTTTCTCATCCACTCTCACGCTTTTCTGCTCTATGGAGCATTTGATTTTATTCCAACACTAAAGCACAGATATTTGGAGAATAATGCATTGCAACCTGCATTCTCTGCAGAAATTTTAAACAGACTGTCATCTGTCAGATTATTTGTAATCTTTAATGTGAAGAGGAAGATGCCTGTAGGTTTAGAGTTGGAGTAAATGAAATTGGGAGTACAGGACCAATTGTCTTATTGTTTGTATTGTCTAACTGACATTTAATGGACCAAGTTTGTGGGAGTAATATGTTTGCACACAGTTTGTGTTTTACAGGGATGAATTGAAAGTGGGTTTCTGGTCAAGCCTGCTGGATGAACATGATTACTGATAAGGATTTTGTCTAGGTGGAAATGTAACTGCCTTTCCCTCTCCAGGTTTGAATCTGACTATTATTAGAGAGTGATCTTGGTTACGGTTGCAAGAGAATGAAATAAATTGGATGTGGAGAGGGGTTTTAAGTACTAAACAATATTAGATGATTTAGAGTTACTGACAAATCATGAACTTATGTATGCTTTTTCAATAAACAAGTGTAAAATCA

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_04678629_04687645.mRNA False 2265 mRNA 0.45 8 4678102 4688495
TU283776 True 2839 lncRNA 0.37 2 4686635 4689520

Neighbor

gene id symbol gene type direction distance location
CI01000058_04656762_04675421 SFMBT1 coding upstream 2005 4656316 ~ 4676097 (+)
CI01000058_04637318_04650366 PRKCDB, PRKCD, PRKCDA coding upstream 27596 4637218 ~ 4650506 (+)
CI01000058_04584028_04613429 FGD5A coding upstream 64355 4584028 ~ 4613747 (+)
CI01000058_04556260_04565696 FGD5A coding upstream 112094 4556157 ~ 4566008 (+)
CI01000058_04466648_04523385 ZMYND8 coding upstream 154619 4466196 ~ 4523483 (+)
CI01000058_04748480_04757498 QRICH1 coding downstream 59929 4748424 ~ 4757638 (+)
CI01000058_04769469_04774262 TWF2B, TWF2 coding downstream 80974 4769469 ~ 4774485 (+)
CI01000058_04777182_04780095 NA coding downstream 88047 4776542 ~ 4780376 (+)
CI01000058_04782847_04791049 UBA3 coding downstream 94352 4782847 ~ 4791555 (+)
CI01000058_04792565_04803181 TMF1 coding downstream 104070 4792565 ~ 4803404 (+)
G250049 NA non-coding upstream 951 4676913 ~ 4677151 (+)
G250035 NA non-coding upstream 135859 4541999 ~ 4542243 (+)
G250013 NA non-coding upstream 225531 4451527 ~ 4452571 (+)
G249979 NA non-coding upstream 257310 4420348 ~ 4420792 (+)
G249980 NA non-coding upstream 259838 4417925 ~ 4418264 (+)
G250075 NA non-coding downstream 39314 4727809 ~ 4738445 (+)
G250098 NA non-coding downstream 195510 4884005 ~ 4884279 (+)
G250095 NA non-coding downstream 195967 4884462 ~ 4885100 (+)
G250120 NA non-coding downstream 216445 4904940 ~ 4905140 (+)
G250124 NA non-coding downstream 229877 4918372 ~ 4918573 (+)
CI01000058_01794468_01800421 KISS1 other upstream 2880370 1794468 ~ 1800421 (+)
G247940 NA other upstream 3221655 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 3389832 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 4080931 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 4222358 434913 ~ 455744 (+)
G250039 NA other downstream 5913 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 137881 4864571 ~ 4888216 (+)

Expression


Co-expression Network