G247511


Basic Information

Item Value
gene id G247511
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 552741 ~ 553860 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU280935
TGCCAAAAAGTTTTGTAATGTTTTCTTTGAAAGAAAAATAAATAAATAGCCAAATCTACTCTACAGGAATGAATGTTTCACTTTGGTAACCAGGATTTGTTTTCCTCCACCACCTTGAAAAACCTATCTATTGCTATCCAAGGTAACACTTTTTTTTGATGGTCCACTTTAGACATTTGACTAACTAGAAGTAACTTTGCAAATACATGTCAACTAGCAGTCATTAGAGTATTAATAGACTGTCTGCTTAATATCTGCTAGCACTTTTTTTGATGGTCCCCCAACAGACATTCTACTGGCTATAAGCAACTTTGCAATTATATGGCAACTTATTCTACTAACTTGAACCCTAACACCTAACCTTAACCTAACAGTCTACTTCAGTCTGCCAATACTCTAATGAGAGATAGATGACATGTAGTTGCAAAGTTACTTATAGTTAGTAGAATGTCTAAATTGGACTATCGAAAAAAGTGTAAACCTATCCAAACCTCACCAAGCACTGATTTGTGTAGCTCCTCCCATTTGCCTGCATGAGCGAGGTGATAGGGCAGTTCATGAAGCTTCCGTAAATTGGCAATTTCTCCAGTGAACCACAAGGGCTGGGGTGGTACCTTAAAAATATAGCATGTTTTACCACCAAAAAAAAAAAACTGTAAATATATAAGTTACTTACATCTAAATGCTGATTTTGTGACCTTGAACAATACCTTTCTGTCAGCATTTAGCAGTGTGGTTAGCGAGGGCAGAAGAATAGGCCTGAGCTGCCCTTGACTCCACTGTCCTGAGAAATACTCGGCGAGGATGGCGTGCATGTCAGCTTTCACATTGCGTGACAAATATCTCTTCCTTACCAGCTCTTTGAACTGCCTAAGAAAAGTAAAGGCTAAGATGAGAACACTGACAGAATGGGCATATAGAGCACTAGGATTTTTTCCTAGAGGGCTGTTGACTTCCAGACTAGAGACTGTCAAGGGGTCAAGTTTCGACTGGTTAGCATTGGTTAGTTAGCCCCTGCTGGTAGATCCCATTCAAAAGTAGTTTCATATTCGATATCTAAATTTTCTCTGTCTGCTTCACTGCAAAAAAATTACATAATTTTAACTGTACAATATTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU280935 True 1120 lncRNA 0.38 1 552741 553860

Neighbor

gene id symbol gene type direction distance location
CI01000058_00482663_00504956 RPF1, SPATA1 coding downstream 47535 481748 ~ 505206 (-)
CI01000058_00441219_00462553 NA coding downstream 90022 441211 ~ 462719 (-)
CI01000058_00424190_00424456 NA coding downstream 127778 424142 ~ 424963 (-)
CI01000058_00282795_00302233 RAP1B, RAP1A coding downstream 250508 281394 ~ 302233 (-)
CI01000058_00252333_00267027 RPN2 coding downstream 285714 252283 ~ 267027 (-)
CI01000058_00570327_00573074 NA coding upstream 16413 570273 ~ 573074 (-)
CI01000058_00599524_00634109 APC2 coding upstream 45319 599179 ~ 634109 (-)
CI01000058_00665144_00668842 NA coding upstream 111176 665036 ~ 668842 (-)
CI01000058_00673067_00690079 NA coding upstream 118358 672218 ~ 690095 (-)
CI01000058_00694430_00713270 ADGRL4 coding upstream 140479 694339 ~ 713270 (-)
G247510 NA non-coding downstream 106 552063 ~ 552635 (-)
G247509 NA non-coding downstream 1264 550188 ~ 551477 (-)
G247508 NA non-coding downstream 4186 548218 ~ 548555 (-)
G247507 NA non-coding downstream 4533 548001 ~ 548208 (-)
G247506 NA non-coding downstream 4802 547736 ~ 547939 (-)
G247515 NA non-coding upstream 6703 560563 ~ 560996 (-)
G247522 NA non-coding upstream 9807 563667 ~ 564163 (-)
G247520 NA non-coding upstream 11172 565032 ~ 565615 (-)
G247524 NA non-coding upstream 24360 578220 ~ 578438 (-)
G247601 NA non-coding upstream 117236 671096 ~ 671356 (-)
G247592 NA other upstream 92583 646443 ~ 654949 (-)
CI01000058_02859435_02860658 FAM72A other upstream 2304623 2858483 ~ 2861491 (-)
G250230 NA other upstream 3134783 3688643 ~ 3696711 (-)

Expression


Co-expression Network