G247520



Basic Information


Item Value
gene id G247520
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 565032 ~ 565615 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU280952
CTTGTACTCCATGGTGTGATTCAACAAGACAGGACTCAGATTCCACAACTTCTGGACACAGTCTTGAGAGCCAATCAAAGCTTGTGCGTCCCAGTTGCTCATGGTGATGCAGGTTATGGCTGCACCGTGGTGATCCAGCTCAGCTGCTGTGGCGCTCTTAAAGTCATAGATTACAACTTCACCACCAAAGGTCCCATAGAGCAGCCTGCAGTCGGACAACAGAGCCATGGCGGAGATTGGGGAATGCAGTAGGCACAAGGAGTACCTCTCAAATGGGCCGTCCACACAGGGGAAACTGTCCCTCGCTGTAATCTCAAACAGACAGACCGCATCCTCATATGCCACGGCCATTCTATCCTCCCGTGGGCTGATAGCCATGCTGCGCACCGTCGGTAGGCTTTCTGGAGGTGGCAGGCACAGGGTTTCTAGGGCAAAGTCCAGTGGGTAAATAAGGATGGTACCAGTCCGCAGTCCACAAAAGAGTAGATGTTTCTGCTGGGCTAATTCCATGCAGCACACTTCTGAGGACACGTCCATACTGTCTGTCTGTAGACCTGTGAAACATGTGAATGTGAACTTTGACT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU280952 True 584 lncRNA 0.52 1 565032 565615

Neighbor


gene id symbol gene type direction distance location
CI01000058_00482663_00504956 RPF1, SPATA1 coding downstream 59826 481748 ~ 505206 (-)
CI01000058_00441219_00462553 NA coding downstream 102313 441211 ~ 462719 (-)
CI01000058_00424190_00424456 NA coding downstream 140069 424142 ~ 424963 (-)
CI01000058_00282795_00302233 RAP1B, RAP1A coding downstream 262799 281394 ~ 302233 (-)
CI01000058_00252333_00267027 RPN2 coding downstream 298005 252283 ~ 267027 (-)
CI01000058_00570327_00573074 NA coding upstream 4658 570273 ~ 573074 (-)
CI01000058_00599524_00634109 APC2 coding upstream 33564 599179 ~ 634109 (-)
CI01000058_00665144_00668842 NA coding upstream 99421 665036 ~ 668842 (-)
CI01000058_00673067_00690079 NA coding upstream 106603 672218 ~ 690095 (-)
CI01000058_00694430_00713270 ADGRL4 coding upstream 128724 694339 ~ 713270 (-)
G247522 NA non-coding downstream 869 563667 ~ 564163 (-)
G247515 NA non-coding downstream 4036 560563 ~ 560996 (-)
G247511 NA non-coding downstream 11172 552741 ~ 553860 (-)
G247510 NA non-coding downstream 12397 552063 ~ 552635 (-)
G247509 NA non-coding downstream 13555 550188 ~ 551477 (-)
G247524 NA non-coding upstream 12605 578220 ~ 578438 (-)
G247601 NA non-coding upstream 105481 671096 ~ 671356 (-)
G247618 NA non-coding upstream 161823 727438 ~ 727802 (-)
G247624 NA non-coding upstream 166464 732079 ~ 732345 (-)
G247725 NA non-coding upstream 188279 753894 ~ 754675 (-)
G247592 NA other upstream 80828 646443 ~ 654949 (-)
CI01000058_02859435_02860658 FAM72A other upstream 2292868 2858483 ~ 2861491 (-)
G250230 NA other upstream 3123028 3688643 ~ 3696711 (-)

Expression



Co-expression Network