Item | Value |
---|---|
gene id | G247520 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000058 |
NCBI id | null |
chromosome length | 5213219 |
location | 565032 ~ 565615 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU280952 | True | 584 | lncRNA | 0.52 | 1 | 565032 | 565615 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000058_00482663_00504956 | RPF1, SPATA1 | coding | downstream | 59826 | 481748 ~ 505206 (-) |
CI01000058_00441219_00462553 | NA | coding | downstream | 102313 | 441211 ~ 462719 (-) |
CI01000058_00424190_00424456 | NA | coding | downstream | 140069 | 424142 ~ 424963 (-) |
CI01000058_00282795_00302233 | RAP1B, RAP1A | coding | downstream | 262799 | 281394 ~ 302233 (-) |
CI01000058_00252333_00267027 | RPN2 | coding | downstream | 298005 | 252283 ~ 267027 (-) |
CI01000058_00570327_00573074 | NA | coding | upstream | 4658 | 570273 ~ 573074 (-) |
CI01000058_00599524_00634109 | APC2 | coding | upstream | 33564 | 599179 ~ 634109 (-) |
CI01000058_00665144_00668842 | NA | coding | upstream | 99421 | 665036 ~ 668842 (-) |
CI01000058_00673067_00690079 | NA | coding | upstream | 106603 | 672218 ~ 690095 (-) |
CI01000058_00694430_00713270 | ADGRL4 | coding | upstream | 128724 | 694339 ~ 713270 (-) |
G247522 | NA | non-coding | downstream | 869 | 563667 ~ 564163 (-) |
G247515 | NA | non-coding | downstream | 4036 | 560563 ~ 560996 (-) |
G247511 | NA | non-coding | downstream | 11172 | 552741 ~ 553860 (-) |
G247510 | NA | non-coding | downstream | 12397 | 552063 ~ 552635 (-) |
G247509 | NA | non-coding | downstream | 13555 | 550188 ~ 551477 (-) |
G247524 | NA | non-coding | upstream | 12605 | 578220 ~ 578438 (-) |
G247601 | NA | non-coding | upstream | 105481 | 671096 ~ 671356 (-) |
G247618 | NA | non-coding | upstream | 161823 | 727438 ~ 727802 (-) |
G247624 | NA | non-coding | upstream | 166464 | 732079 ~ 732345 (-) |
G247725 | NA | non-coding | upstream | 188279 | 753894 ~ 754675 (-) |
G247592 | NA | other | upstream | 80828 | 646443 ~ 654949 (-) |
CI01000058_02859435_02860658 | FAM72A | other | upstream | 2292868 | 2858483 ~ 2861491 (-) |
G250230 | NA | other | upstream | 3123028 | 3688643 ~ 3696711 (-) |