G247578


Basic Information

Item Value
gene id G247578
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 716510 ~ 716777 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU281012
AAATGTGTTTATTTTAACCGTGCGGTGGCGCCAGATACTCTTTAATCGGTAATGACAAAAGGAGACATAATTAATTTATAACATTAACAAGATGACTCGTTGAATTCATTTTGGGAGCGACGACTGAATGTATTTTTAGTCAAATGCCTGTATATAAGATTAGTATTGACAAAGTTCAGAGGCTGTCATATATGTGAATCAACTTACTTTGTTGTGTATTTTCAATATGAAAAATAACTTTTATATTGATGGATTAATTGCATTTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281012 True 268 lncRNA 0.31 1 716510 716777

Neighbor

gene id symbol gene type direction distance location
CI01000058_00652594_00653181 DIRAS1A, DIRAS1B, DIRAS1, DIRAS2 coding upstream 61607 652335 ~ 654903 (+)
CI01000058_00592498_00596709 NA coding upstream 119697 592331 ~ 597171 (+)
CI01000058_00548398_00567030 NWD1 coding upstream 149338 547827 ~ 567172 (+)
CI01000058_00529237_00544012 MEPD, THOP1 coding upstream 172483 529185 ~ 544027 (+)
CI01000058_00517452_00527181 TMEM38A coding upstream 187703 517150 ~ 528807 (+)
CI01000058_00728698_00738214 NA coding downstream 11743 728520 ~ 738938 (+)
CI01000058_00847992_00862210 NA coding downstream 130520 847297 ~ 862430 (+)
CI01000058_00870909_00930600 ADGRL2A, ADGRL2 coding downstream 154132 870909 ~ 930600 (+)
CI01000058_01239590_01240099 NA coding downstream 522725 1239502 ~ 1240300 (+)
CI01000058_01248234_01262911 PRKACBA, PRKACB coding downstream 531457 1248234 ~ 1263318 (+)
G247563 NA non-coding upstream 33068 683226 ~ 683442 (+)
G247337 NA non-coding upstream 209157 506308 ~ 507353 (+)
G247342 NA non-coding upstream 227107 489166 ~ 489403 (+)
G247323 NA non-coding upstream 252529 463739 ~ 463981 (+)
CI01000058_00435196_00437830 AGTRAP non-coding upstream 255721 434913 ~ 455744 (+)
G247617 NA non-coding downstream 10662 727439 ~ 727828 (+)
G247641 NA non-coding downstream 24071 740848 ~ 754686 (+)
G247653 NA non-coding downstream 46818 763595 ~ 763815 (+)
G247663 NA non-coding downstream 68248 785025 ~ 785240 (+)
G247667 NA non-coding downstream 73502 790279 ~ 790496 (+)
CI01000058_01280337_01289153 DNASE2B other downstream 511832 1278592 ~ 1289874 (+)
G247940 NA other downstream 736220 1452997 ~ 1456447 (+)
CI01000058_01794468_01800421 KISS1 other downstream 1078936 1794468 ~ 1800421 (+)
G250039 NA other downstream 3977631 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 4109599 4864571 ~ 4888216 (+)

Expression


Co-expression Network