Gene
RNA
| Item | Value |
|---|---|
| gene id | G247618 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000058 |
| NCBI id | null |
| chromosome length | 5213219 |
| location | 727438 ~ 727802 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: uncharacterized protein LOC107738097 |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU281057 | False | 365 | lncRNA | 0.44 | 1 | 727438 | 727802 |
| TU281056 | True | 347 | lncRNA | 0.44 | 1 | 727456 | 727802 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000058_00694430_00713270 | ADGRL4 | coding | downstream | 14168 | 694339 ~ 713270 (-) |
| CI01000058_00673067_00690079 | NA | coding | downstream | 37343 | 672218 ~ 690095 (-) |
| CI01000058_00665144_00668842 | NA | coding | downstream | 58596 | 665036 ~ 668842 (-) |
| CI01000058_00599524_00634109 | APC2 | coding | downstream | 93329 | 599179 ~ 634109 (-) |
| CI01000058_00570327_00573074 | NA | coding | downstream | 154364 | 570273 ~ 573074 (-) |
| CI01000058_00958655_00993242 | NA | coding | upstream | 230819 | 958621 ~ 1025837 (-) |
| CI01000058_01143391_01218374 | TTLL7 | coding | upstream | 415542 | 1143344 ~ 1218374 (-) |
| CI01000058_01273319_01276576 | UOX | coding | upstream | 545466 | 1273268 ~ 1276977 (-) |
| CI01000058_01292655_01293207 | NA | coding | upstream | 564184 | 1291960 ~ 1293207 (-) |
| CI01000058_01317202_01318789 | NA | coding | upstream | 589328 | 1317130 ~ 1320180 (-) |
| G247601 | NA | non-coding | downstream | 56082 | 671096 ~ 671356 (-) |
| G247524 | NA | non-coding | downstream | 149000 | 578220 ~ 578438 (-) |
| G247520 | NA | non-coding | downstream | 161823 | 565032 ~ 565615 (-) |
| G247522 | NA | non-coding | downstream | 163275 | 563667 ~ 564163 (-) |
| G247515 | NA | non-coding | downstream | 166442 | 560563 ~ 560996 (-) |
| G247624 | NA | non-coding | upstream | 4277 | 732079 ~ 732345 (-) |
| G247725 | NA | non-coding | upstream | 26092 | 753894 ~ 754675 (-) |
| G247726 | NA | non-coding | upstream | 27703 | 755505 ~ 755727 (-) |
| G247727 | NA | non-coding | upstream | 28631 | 756433 ~ 756646 (-) |
| G247734 | NA | non-coding | upstream | 58066 | 785868 ~ 786154 (-) |
| G247592 | NA | other | downstream | 72489 | 646443 ~ 654949 (-) |
| CI01000058_02859435_02860658 | FAM72A | other | upstream | 2130681 | 2858483 ~ 2861491 (-) |
| G250230 | NA | other | upstream | 2960841 | 3688643 ~ 3696711 (-) |
