G247641


Basic Information

Item Value
gene id G247641
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 740848 ~ 754686 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU281094
TTTTCTCTGCGTGATTGATGAGAAGAGTAGCAGCATAACTTTGGATAAAATTTAAAAACATCAAGAGAGGATTAAAACAGAGACATTTATATGCTCTATTTTCTTTGGATTTGTTATGCTGCTGTTATGCTGCTGCTCGTTTCATCAGTCGCACAGAGAGAAGAAAATGGCTTCCCACATTCAGCAACTAGTGTGGAAACTCTTATCAGGGGAACACAATTATGAAGTGCTCTTGGCAGTAAAACTGGCCTTGGAGGAGAAGAGAAACTGGTTGAAGGGAACTATTCCTCGTTCTCAGTGACCACTGCAACCTGGAGAACATCCATGGAATCCATGGCAAGCCATGTTAGCCCCCCCAGATTCAGTTTCACTCTTAATTAAAAAAAAAAAAAAACTGCACGTGCTACGAAAAAAAATCGATCTGTGCAAATTTATCTCAGTAACGTGTGCAATAGTTTGTGTAATGTGAGCGTTTGTGTGTGAGGTTAATCTATACATAGGACTGTACAATTTTGGCTTAGTGCGACTATGAAATCGCAAAGTTTTAATTAAATAAATATATGTGCAGCATGTGAACTGTACACTGTGAACAGAGCGGATCGATCAATTTGCATTAAATGCTGCTCCATCTCTGCAAGCGCTGTGAGATTGAGTGACTTACAATGTGCATTTGAAAAAGCAACAAGTGCCAAACATCTTTCCAAACTTGTAATAAAAAGCGATTACAAACCTGTTATCCAACAAAAGAGATCATCTAATGACATGTTTTTACTCCAAACTCACTTCATAGCATCAGTTAAGTGTTTGAAATAATTTTCTTGTGATCCAATGTGGCTTCATATCATAGAATGAGGCAGAAATGCTATTATTTTACAGTATTATATTTCAGTGATAAAGACTGTCGATTGGCATTGCATTACAAAAATACTTTTTTCTTATGAAAATACCTGATATGTCTTGAAGAACACAAATAAACCATTTATTGTCAC
>TU281096
TTTTCTCTGCGTGATTGATGAGAAGAGTAGCAGCATAACTTTGGATAAAATTTAAAAACATCAAGAGAGGATTAAAACAGAGACATTTATATGCTCTATTTTCTTTGGATTTGTTATGCTGCTGTTATGCTGCTGCTCGTTTCATCAGTCGCACAGAGAGAAGAAAATGGCTTCCCACATTCAGCAACTAGTGTGGTAGGGTGGGACTTCAACATAAACCTCATGAAACTCTTATCAGGGGAACACAATTATGAAGTGCTCTTGGCAGTAAAACTGGCCTTGGAGGAGAAGAGAAACTGGTTGAAGGGAACTATTCCTCGTTCTCAGTGACCACTGCAACCTGGAGAACATCCATGGAATCCATGGCAAGCCATGTTAGCCCCCCCAGATTCAGTTTCACTCTTAATTAAAAAAAAAAAAAAACTGCACGTGCTACGAAAAAAAATCGATCTGTGCAAATTTATCTCAGTAACGTGTGCAATAGTTTGTGTAATGTGAGCGTTTGTGTGTGAGGTTAATCTATACATAGGACTGTACAATTTTGGCTTAGTGCGACTATGAAATCGCAAAGTTTTAATTAAATAAATATATGTGCAGCATGTGAACTGTACACTGTGAACAGAGCGGATCGATCAATTTGCATTAAATGCTGCTCCATCTCTGCAAGCGCTGTGAGATTGAGTGACTTACAATGTGCATTTGAAAAAGCAACAAGTGCCAAACATCTTTCCAAACTTGTAATAAAAAGCGATTACAAACCTGTTATCCAACAAAAGAGATCATCTAATGACATGTTTTTACTCCAAACTCACTTCATAGCATCAGTTAAGTGTTTGAAATAATTTTCTTGTGATCCAATGTGGCTTCATATCATAGAATGAGGCAGAAATGCTATTATTTTACAGTATTATATTTCAGTGATAAAGACTGTCGATTGGCATTGCATTACAAAAATACTTTTTTCTTATGAAAATACCTGATATGTCTTGAAGAACACAAATAAACCATTTATTGTCAC
>TU281097
TTTTCTCTGCGTGATTGATGAGAAGAGTAGCAGCATAACTTTGGATAAAATTTAAAAACATCAAGAGAGGATTAAAACAGAGACATTTATATGCTCTATTTTCTTTGGATTTGGTCAGATTTTCTCTCCTACACTGGAACTGCGTTCAATTCAGCTTGATGATTCAAGATGGCGAGCCTTCCCAGTGAGATGAACATTGTTTACTGAAACTCTTATCAGGGGAACACAATTATGAAGTGCTCTTGGCAGTAAAACTGGCCTTGGAGGAGAAGAGAAACTGGTTGAAGGGAACTATTCCTCGTTCTCAGTGACCACTGCAACCTGGAGAACATCCATGGAATCCATGGCAAGCCATGTTAGCCCCCCCAGATTCAGTTTCACTCTTAATTAAAAAAAAAAAAAAACTGCACGTGCTACGAAAAAAAATCGATCTGTGCAAATTTATCTCAGTAACGTGTGCAATAGTTTGTGTAATGTGAGCGTTTGTGTGTGAGGTTAATCTATACATAGGACTGTACAATTTTGGCTTAGTGCGACTATGAAATCGCAAAGTTTTAATTAAATAAATATATGTGCAGCATGTGAACTGTACACTGTGAACAGAGCGGATCGATCAATTTGCATTAAATGCTGCTCCATCTCTGCAAGCGCTGTGAGATTGAGTGACTTACAATGTGCATTTGAAAAAGCAACAAGTGCCAAACATCTTTCCAAACTTGTAATAAAAAGCGATTACAAACCTGTTATCCAACAAAAGAGATCATCTAATGACATGTTTTTACTCCAAACTCACTTCATAGCATCAGTTAAGTGTTTGAAATAATTTTCTTGTGATCCAATGTGGCTTCATATCATAGAATGAGGCAGAAATGCTATTATTTTACAGTATTATATTTCAGTGATAAAGACTGTCGATTGGCATTGCATTACAAAAATACTTTTTTCTTATGAAAATACCTGATATGTCTTGAAGAACACAAATAAACCATTTATTGTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281094 False 989 lncRNA 0.37 3 740848 754686
TU281096 False 1018 lncRNA 0.37 3 740848 754686
TU281097 True 999 lncRNA 0.36 3 740848 754686

Neighbor

gene id symbol gene type direction distance location
CI01000058_00728698_00738214 NA coding upstream 1910 728520 ~ 738938 (+)
CI01000058_00652594_00653181 DIRAS1A, DIRAS1B, DIRAS1, DIRAS2 coding upstream 85945 652335 ~ 654903 (+)
CI01000058_00592498_00596709 NA coding upstream 144035 592331 ~ 597171 (+)
CI01000058_00548398_00567030 NWD1 coding upstream 173676 547827 ~ 567172 (+)
CI01000058_00529237_00544012 MEPD, THOP1 coding upstream 196821 529185 ~ 544027 (+)
CI01000058_00847992_00862210 NA coding downstream 92611 847297 ~ 862430 (+)
CI01000058_00870909_00930600 ADGRL2A, ADGRL2 coding downstream 116223 870909 ~ 930600 (+)
CI01000058_01239590_01240099 NA coding downstream 484816 1239502 ~ 1240300 (+)
CI01000058_01248234_01262911 PRKACBA, PRKACB coding downstream 493548 1248234 ~ 1263318 (+)
CI01000058_01266712_01271962 SAMD13 coding downstream 511067 1265753 ~ 1274437 (+)
G247617 NA non-coding upstream 13020 727439 ~ 727828 (+)
G247578 NA non-coding upstream 24071 716510 ~ 716777 (+)
G247563 NA non-coding upstream 57406 683226 ~ 683442 (+)
G247337 NA non-coding upstream 233495 506308 ~ 507353 (+)
G247342 NA non-coding upstream 251445 489166 ~ 489403 (+)
G247653 NA non-coding downstream 8909 763595 ~ 763815 (+)
G247663 NA non-coding downstream 30339 785025 ~ 785240 (+)
G247667 NA non-coding downstream 35593 790279 ~ 790496 (+)
G247672 NA non-coding downstream 39402 794088 ~ 794313 (+)
G247683 NA non-coding downstream 52199 806885 ~ 807312 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 285104 434913 ~ 455744 (+)
CI01000058_01280337_01289153 DNASE2B other downstream 473923 1278592 ~ 1289874 (+)
G247940 NA other downstream 698311 1452997 ~ 1456447 (+)
CI01000058_01794468_01800421 KISS1 other downstream 1041027 1794468 ~ 1800421 (+)
G250039 NA other downstream 3939722 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 4071690 4864571 ~ 4888216 (+)

Expression


Co-expression Network