G247910


Basic Information

Item Value
gene id G247910
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1201166 ~ 1209951 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU281373
AATAACGAAATACTCCAAATAAAGTTTAATTATGATTCAAACACACATACCAGTGTTGGATTTACTGGTTTAAAACGTTGTTGTTGTTTTTTTAATTACTGGTAACTGTTCTAAACTGTAGAATTTACAGGTTGTTCTGTAAACATGTTTAAATTTTTACTGTATTTTTACTGAATTATTCTGGCAATCACAGCTGGCAGTTTTTTATTTTATTTTATTTTATTTTTTTCCTGTAAAAACAACTACTTTTCTACTGTGTATTGCTAATACATTTTGGGCCAGATTTACTAACAGCTGGCACCAGCGCAAACCCTTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAAAAAAAAAAAAAAAACAGTACTGTCAAGATTTACTAAAGACATGCAGTGGAAAAATTAGTAATGAAAAGGTGTGGATTTTTTTTTTTGTCAGCACATATAGATAACACTGCAAATGTAAATAATAATAAAATAAGAATAAAATTTACAAAAAAAATGTTTAGATGGTCAAGACGTACAAAAAAAGTACTATTGCAGTATTATCCTCCATCATGTTGGCTTCTAACAGGTAATGACAATCAAATGTGGACTGTATACTCTATATCAACATAAGTGGGATCAAAAAGTGGACTGATTGAGGACAGAAGGTGACAACAGACCTCTAGCAGCCAGGGCTTGAGCTTGCGGTCGAGGATTATGTCAAAACCCAGCACCTCAAAGCAGACACTGGCGCTCCCTGGTGGCTGACCCGGGCGGCACATACGGTAGGCGTGGAGGACATGTGGCTCGGCCACTATCAGGGTCTTCACCACCAGCTCTGATACATCGCCCCAGAATTTGGCCACATCGTAATCGTTGGTTCGAAGGAACTCTGTGAACCACCCAATAGACCGCTTACTGCCTTTGTCCACCGTTTCATCTCGCTCAAAGTTCTCATTGTGTTTGTTTACGGAGTAGTTGGTCAAGTGCATGTACAGCTGATTCAGGTTCGACTCGTTTGGCGTGTGGTACTTCTCTGTACCCATTCGAACCAGGCCGTCATTGTAGAGGAAGACACGCAGTGGGTCACAGGAAGTAACAAGAATGTAGAATCTCAGGTCAAACTTGTAGCCCTCCATTAGGAAGGGCTTATCCAAGTATTCCTGCACAATGAAGTGGTCCTGGACTGGGAGCTTTTCGTAGTTTCGAATCAGAGATATCCTGGGAGAAAATGGATAAGATTCTATCACATCCCAAAAATGTGGTGCATATTTTATTGTTGGTTAAAAATCCAAACCTCTGAAGTGTGTCAGAGAGAGCGAGTTTATTAAGGAGTTGACTCTGTCGCTGGTCCCTGGACCCTGACTAGACCCAGGTTAATAAGACCAGACGTCTTGGTCTGTTTTAAGCCCTGCCATCATTTATTTCCTTTGATTTTGAGGTTGAACAGATCCTCAGCTCTTGGCTGTTATAGAATACAGACAACGATGTGTTCACCAGTACCAAACACAAGAAAAAGTGAAGTTTGGATGTTTAACAAACAAAGGGGCCTTAGAAAAACAATTTTGATGGTAAAATATACAGCCATTGGTCTGCATTGACTTAATTGGTTACATGTTTTTCTTCGTCCGGTTTGCATGTGGCCTCAACAATTACCTGAAACGTCAACTTTCCAAGAACCGCAAGCTGCTGAAGGAGTGCTTGATCATCACAGTTCATTCGTTAGCTATGTCAGCTGATAAATATTGCAACAGAATTTGTCTACTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281373 True 1779 lncRNA 0.40 3 1201166 1209951

Neighbor

gene id symbol gene type direction distance location
CI01000058_00870909_00930600 ADGRL2A, ADGRL2 coding upstream 270566 870909 ~ 930600 (+)
CI01000058_00847992_00862210 NA coding upstream 338736 847297 ~ 862430 (+)
CI01000058_00728698_00738214 NA coding upstream 462228 728520 ~ 738938 (+)
CI01000058_00652594_00653181 DIRAS1A, DIRAS1B, DIRAS1, DIRAS2 coding upstream 546263 652335 ~ 654903 (+)
CI01000058_00592498_00596709 NA coding upstream 604353 592331 ~ 597171 (+)
CI01000058_01239590_01240099 NA coding downstream 29551 1239502 ~ 1240300 (+)
CI01000058_01248234_01262911 PRKACBA, PRKACB coding downstream 38283 1248234 ~ 1263318 (+)
CI01000058_01266712_01271962 SAMD13 coding downstream 55802 1265753 ~ 1274437 (+)
CI01000058_01280337_01289153 DNASE2B coding downstream 68641 1278592 ~ 1289874 (+)
CI01000058_01298298_01311989 BMP7A coding downstream 88125 1298076 ~ 1313046 (+)
G247889 NA non-coding upstream 47184 1148527 ~ 1153982 (+)
G247821 NA non-coding upstream 160822 1040111 ~ 1040344 (+)
G247820 NA non-coding upstream 166820 1034115 ~ 1034346 (+)
G247723 NA non-coding upstream 193996 1006725 ~ 1007170 (+)
G247711 NA non-coding upstream 230295 970639 ~ 970871 (+)
G247917 NA non-coding downstream 11642 1221593 ~ 1248904 (+)
G247995 NA non-coding downstream 20259 1230210 ~ 1231846 (+)
G247960 NA non-coding downstream 93350 1303301 ~ 1330860 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 745422 434913 ~ 455744 (+)
G247940 NA other downstream 243046 1452997 ~ 1456447 (+)
CI01000058_01794468_01800421 KISS1 other downstream 585762 1794468 ~ 1800421 (+)
G250039 NA other downstream 3484457 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 3616425 4864571 ~ 4888216 (+)

Expression


Co-expression Network