XLOC_010132 (cd83)


Basic Information

Item Value
gene id XLOC_010132
gene name cd83
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38394371 ~ 38397359 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020106
TAGCTACAGCTTGgcacacagtcagaagcatgcgtcGCTTCTCGGAATTGATCGTATGTCTAGTAACTTTAGTTGTGGCGGAGGATCAGCTGCCGGAGATTCGCGCCATCGCCGGGGAAGACGCGGTGCTGCGCTGCTCGGCGAAGTCAGAGACCGGCGTCCAGTATCGCTCGGTCATATGGTATAAGGTTGATGAAGCAGAGCCTTCCCAGCAGTTAACTGGCCTTGTGAGGAAACGGCTCACTGAAGATGATGGGAAAGTGGAGAAATATAACGGTGTCGAGCGAGAAGTGGTACTACTGGAGGACTCAAAGAATCTTATTCTGTCTAATGTAACAGCAGAAGACAGTGGGATATACAGATGCTTTCTGTCTGCTCCGCTTGGCTATCAGAACCAGCGAGGCGATATCATTCTGACAGTCTACAAACCTCAAACAGTCGAGCGAATGGAGTTTAATAAAAGTTCTCTGGTTTATCTTGGGGAAATTGCTGCTATTGCAGGACTCTTTCTGGGCTTCTTGTTTTTTGGCATAAGCTATGTGTATATAAGGTCTTTTAACCAAAGAGGAAAGAAGCTCTCTTTGCTGAAAATGCCAAGTCCAGGCAAGAATTTGATCACCAGCAATCATTTGATTTGCAAGACTTTACCTGAAGTGTATGTGTGATGGAGGCATACTTCTCAAAGCCGGATTGGGCTTTTCATCAAAAACCCTGAATTAAACCCAGAGTTAACAGAGGAAGTTTAAATCAAGTGTTGTGAAACCACTTAAGCTAAGTTTAAGTTTTTTCAACCGAAGCTTAATCTGCAGTCTGGGTTTTTTTCAAATCGTTTTGTGCAACAGACCTCAGAGCTGATTGGAAAACAAAACGCAGACAGGAGCTCAAGAT
>TCONS_00020107
CGGAATTGATCGTATGTCTAGTAACTTTAGTTGTGGCGGAGGATCAGCTGCCGGAGATTCGCGCCATCGCCGGGGAAGACGCGGTGCTGCGCTGCTCGGCGAAGTCAGAGACCGGCGTCCAGTATCGCTCGGTCATATGGTATAAGGTTGATGAAGCAGAGCCTTCCCAGCAGTTAACTGGCCTTGTGAGGAAACGGCTCACTGAAGATGATGGGAAAGTGGAGAAATATAACGGTGTCGAGCGAGAAGTGGTACTACTGGAGGACTCAAAGAATCTTATTCTGTCTAATGTAACAGCAGAAGACAGTGGGATATACAGATGCTTTCTGTCTGCTCCGCTTGGCTATCAGAACCAGCGAGGCGATATCATTCTGACAGTCTACAGTAAGTACTTTTCTTAACACCAAAAGTATTTAAACACAATTCACATTGAAAAAGACAACTTTTAAAAATCAAACTCAAGTTGACTAGTGTGCCAGCACATTATGTAAAGTTATTAATCTAAGTCAGGGGTcagcaaacttgttcctggagggccagtgttcagCAGATTTTGGCTCcatctctaatcaaacacacctgaacaagctaatcaaggtcttactaggtatacttgaaacatccaggcaggtgtgttgatgctagttggagctaaaccctgtagAGACACCGGCCTTCTAGGACAGAGATTGGTGTCCCCTgctgtaatattcattaatatttaagGGTAGTTTTAAAGACCTCTGAATACTTGTACTATGAGGACTAGGCAATGAACGTGACTGACAAATTAACAATCTCATGTTG

Function

symbol description
cd83 Acts upstream of or within T cell activation involved in immune response and dendritic cell antigen processing and presentation. Located in cell surface. Part of IgM immunoglobulin complex. Is expressed in several structures, including digestive system; gill; heart; immune system; and integument. Orthologous to human CD83 (CD83 molecule).

GO:

id name namespace
GO:0002286 T cell activation involved in immune response biological_process
GO:0002468 dendritic cell antigen processing and presentation biological_process
GO:0009986 cell surface cellular_component
GO:0071753 IgM immunoglobulin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-060503-762 Acts upstream of or within T cell activation involved in immune response and dendritic cell antigen processing and presentation. Located in cell surface. Part of IgM immunoglobulin complex. Is expressed in several structures, including digestive system; gill; heart; immune system; and integument. Orthologous to human CD83 (CD83 molecule).

Ensembl:

ensembl_id ENSDARG00000079553

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020106 False 888 mRNA 0.45 5 38394371 38397359
TCONS_00020107 True 807 processed_transcript 0.44 3 38394413 38396795

Neighbor

gene id symbol gene type direction distance location
XLOC_010131 zgc:113232 coding upstream 4488 38360002 ~ 38389883 (+)
XLOC_010130 elp6 coding upstream 34734 38350704 ~ 38359637 (+)
XLOC_010129 gabpb2b coding upstream 46815 38337783 ~ 38347556 (+)
XLOC_010128 bnipl coding upstream 94727 38277339 ~ 38299644 (+)
XLOC_010127 prune coding upstream 127486 38240027 ~ 38266885 (+)
XLOC_010133 emc2 coding downstream 262116 38659475 ~ 38729606 (+)
XLOC_010134 NA coding downstream 334428 38731787 ~ 38733942 (+)
XLOC_010135 trhra coding downstream 421505 38818864 ~ 38826777 (+)
XLOC_010136 eny2 coding downstream 543399 38940758 ~ 38943685 (+)
XLOC_010137 sybu coding downstream 749337 39146696 ~ 39168840 (+)
XLOC_010122 CT025591.1 non-coding upstream 373237 38021019 ~ 38021134 (+)
XLOC_010119 BX294107.1 non-coding upstream 622771 37771483 ~ 37771600 (+)
XLOC_010118 NA non-coding upstream 680734 37713264 ~ 37713637 (+)
XLOC_010117 NA non-coding upstream 733760 37659520 ~ 37660611 (+)
XLOC_010116 NA non-coding upstream 752508 37633447 ~ 37641863 (+)
XLOC_010142 NA non-coding downstream 1226765 39624124 ~ 39627370 (+)
XLOC_010143 NA non-coding downstream 1230354 39627713 ~ 39628196 (+)
XLOC_010144 NA non-coding downstream 1234251 39631610 ~ 39632068 (+)
XLOC_010145 NA non-coding downstream 1459826 39857185 ~ 39901940 (+)

Expression


Co-expression Network